Sequence of DPV Pepino mosaic virus
Pepino mosaic virus complete genome, isolate LE-2002
ACC No: AJ606360
Dated: 2005-04-15 | Length: 6449 | CRC: 301490740
!!NA_SEQUENCE 1.0
ID AJ606360 standard; genomic RNA; VRL; 6449 BP.
XX
AC AJ606360;
XX
SV AJ606360.1
XX
DT 07-JAN-2005 (Rel. 82, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE Pepino mosaic virus complete genome, isolate LE-2002
XX
KW coat protein; complete genome; CP gene; RdRp gene;
KW RNA-directed RNA polymerase; TGB1 protein; TGB2 protein; TGB3 protein;
KW TGBp1 gene; TGBp2 gene; TGBp3 gene.
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus.
XX
RN [1]
RP 1-6449
RA Lopez C.;
RT ;
RL Submitted (12-NOV-2003) to the EMBL/GenBank/DDBJ databases.
RL Lopez C., COMAV, Universidad Politecnica de Valencia, Camino de Vera 14,
RL 46022 Valencia, SPAIN.
XX
RN [3]
RX DOI; 10.1007/s00705-004-0438-0.
RX PUBMED; 15592891.
RA Lopez C., Soler S., Nuez F.;
RT "Comparison of the complete sequences of three different isolates of Pepino
RT mosaic virus: Size variability of the TGBp3 protein between tomato and L.
RT peruvianum isolates.";
RL Arch. Virol. 150(3):619-627(2005).
XX
FH Key Location/Qualifiers
FH
FT source 1. .6449
FT /country="Spain:Almeria"
FT /db_xref="taxon:112229"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Pepino mosaic virus"
FT /isolate="LE-2002"
FT /specific_host="Lycopersicon esculentum (tomato)"
FT 5'UTR 1. .86
FT CDS 87. .4406
FT /db_xref="GOA:Q5K4J9"
FT /db_xref="UniProt/TrEMBL:Q5K4J9"
FT /gene="RdRp"
FT /product="RNA-directed RNA polymerase"
FT /EC_number="2.7.7.48"
FT /protein_id="CAE54469.1"
FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND
FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY
FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVDTRIAYISDSLHFMEPADVTHLFD
FT RCQNLKTLMATVVLPVEAIHRQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLE
FT WLKYSRFIGHDPLTGLKYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN
FT IFHPRHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH
FT VVNYFTYVSQLSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW
FT KDFSYTIKTEELVITTHTAIGQAISNAATTYKERKQLTQLVKKGTISLADFEQREPEIT
FT YTEFEPETRPQVDCVTNYNNAVKNLGLSALDEQPQCSSSSSHLPCNEISLAMTDDDNAA
FT AIHEIESLLSEPIIAPQLPALPHKTWASYASDTSSMKNREIENIIAELEISRKENNVQQ
FT TTHDYHAVSDTAQSSGDLPWKAWIPLLNAHGFKGDQLQYSPDGKVIQPIQDINNKTPRS
FT EYPSSIPADLVNTLRNIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCSQSKEWKESFA
FT FKMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLC
FT KLPMEHIKTFEKAMIQPGFPVVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVY
FT HESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASNA
FT LQKCKVPILVPSQMKKSAMQDIGHKAMTYAGCQGLTAPRVQILLDNHTQHCSDRVLYTC
FT LSRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDTYRDEKTEMLNSKPADDSPAEPEA
FT PLTHFPVSNGNNLEKLASALPEKFARELYDKHHGYSNTIQTENPVVQLFQHQQAKDETL
FT FWATIEARLSITTPEANLREFVLKKDVGDILFFNYHNVMCLPADPVDFEPRTWEICAAE
FT VKNTYLAKPMANLINAASRQSPDFDANKISLFLKSQWVKKVEKLGAVKSKPGQTIAAFM
FT QQTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDNLNQFVKQGWNFNRTAQTNDFTAF
FT DQSQDGAMLQFEVMKAKFFNIPADIIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANT
FT ECSIAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFKKLQNKLKLTSKTLFPKQVKG
FT DYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDELHNY
FT LTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH"
FT CDS 4432. .5136
FT /db_xref="GOA:Q5K4J8"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="UniProt/TrEMBL:Q5K4J8"
FT /gene="TGBp1"
FT /product="TGB1 protein"
FT /protein_id="CAE54470.1"
FT /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFLEPKLAIFGDPCQC
FT TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI
FT SASEEEVLGFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAKNPAKTFISLTRHTHK
FT LTIGELNARSNS"
FT CDS 5117. .5488
FT /db_xref="InterPro:IPR001896"
FT /db_xref="UniProt/TrEMBL:Q8JJH7"
FT /gene="TGBp2"
FT /product="TGB2 protein"
FT /protein_id="CAE54471.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH
FT SCYNTHSATNNTQPLSGHH"
FT CDS 5340. .5594
FT /db_xref="InterPro:IPR003411"
FT /db_xref="UniProt/TrEMBL:Q8B083"
FT /gene="TGBp3"
FT /product="TGB3 protein"
FT /protein_id="CAE54472.1"
FT /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC
FT QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN"
FT CDS 5632. .6345
FT /db_xref="GOA:Q8JJF2"
FT /db_xref="InterPro:IPR000052"
FT /db_xref="UniProt/TrEMBL:Q8JJF2"
FT /gene="CP"
FT /product="coat protein"
FT /protein_id="CAE54473.1"
FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
FT 3'UTR 6346. .6409
FT polyA_site 6410
XX
SQ Sequence 6449 BP; 2093 A; 1470 C; 1174 G; 1712 T; 0 other;
AJ606360 Length: 6449 April 19, 2005 08:54 Type: N Check: 7166 ..
1 gaaaacaaaa taaataaaca attatacaaa gttaaactaa cacaacataa
51 ccacgtggaa aaacagcgaa agcactttac cgcattatgt ctcgtgtcag
101 aaatactttg gaaaagatca gagacccaca agtacagtcc agcatttgtg
151 aagctgccta tcaacatgtt cgacctgtac ttaaagaatc tctaatcaat
201 tgtccttacg cgcttaatga ttatgaagca gacacccttg agaatcttgg
251 tgtcacaatt aacccccatg caatccaaac acacacacat gccgcagcca
301 aagtagtcga aaatcgtatg cttgaaattg ttggacatca cttgcctaaa
351 gatgaaaaag taactttcat cttcctcaaa cgtagcaagc tgcgttacat
401 gagaagagct gctgtgcata aagatgtctt tgtcaatcat aacattgaac
451 caaaagactt cttcaggtat gatgaagagt ccacatcaac cagcttttcc
501 gttgatacga gaatcgcata catttcagat tctctacact ttatggaacc
551 tgctgatgtg actcacttgt ttgaccgttg ccaaaacctt aaaacattga
601 tggcaactgt tgtactacct gtggaagcta tacacagaca gacatctcta
651 ttccctgcga tttactccat taactacaat gaagaaggct ttgagtatat
701 cccaggatca cacggtggtg gggcatattt ccacaaatat gaaactctag
751 aatggctcaa atactctaga ttcattggac atgatccatt gactggttta
801 aaatacacca ttacgattca aatggtggag agtcttggtg ccaaccacct
851 tttcctcttc caaagaggaa actttgagac gccgctatac aggacgtttc
901 aaaagaatag ttttgtgaca ttcccaaata tattccatcc ccgacacgtc
951 aatgccacaa aacctatgcc tagatcaagg gccatacagc tgtacttata
1001 tgtgaaatca gtaaataaag ttacgcaaag agatatattt gccaaggtta
1051 gacaactgat ttccactgct gagctagaat tgtatgaccc tgatgaactc
1101 acgcatgttg taaattattt cacatatgtg tcacaactgt catctatcaa
1151 tgattatgac aacatgctca aatccagttt cttcaaaaaa ctggttgcac
1201 ccatgcaaca cgactggagg tgcatgattg aattcttccg gggaaagagt
1251 gacttcaatc aactgctcac agctcttcaa tggaaagatt tttcctatac
1301 tattaagact gaagagcttg taattactac acacactgct ataggacaag
1351 caataagcaa tgcagctacc acatataaag aaagaaagca gctgactcaa
1401 ttggtcaaaa aaggtacaat atccttagca gattttgaac agagagaacc
1451 tgaaataact tacactgagt ttgagcctga aactaggccc caagtggact
1501 gcgttactaa ttataataat gcagttaaaa atttaggtct ttctgcactt
1551 gatgaacagc ctcaatgttc atcttctagc agtcatctac cctgcaatga
1601 aatatcctta gcaatgactg atgacgacaa tgctgcggcc attcatgaaa
1651 ttgaatctct attgtctgaa ccgataatag ctcctcaact tccagcattg
1701 ccacacaaga catgggccag ttatgcttca gacacttcat ccatgaagaa
1751 ccgtgagatt gagaacataa ttgctgagct tgaaatctca cggaaggaaa
1801 ataatgtgca gcaaactact catgattacc atgcagtttc tgacacagct
1851 cagagctccg gagatctccc atggaaagca tggattccac ttctgaatgc
1901 acacggcttc aagggagacc aacttcaata cagtccggat ggcaaagtga
1951 ttcagccaat ccaggacatc aacaacaaaa caccaagatc tgagtaccca
2001 tccagcattc ctgcagatct tgtgaataca ctgcgaaaca ttaaaagagc
2051 agtgtatgcc attcctatta gccatcgaag ggcaagtgct tacagctctg
2101 atatcaaaaa caataggacc ggcaaattac tctgttccca atcaaaagaa
2151 tggaaggaaa gttttgcttt caaaatgcaa catgaagaca tcgttaaatc
2201 tggagtagtc attcacggct gtggcggctc tggaaaatca caagcattac
2251 aaaactttct cagaactctt ggcgactcta atgactgctg cacagtggtt
2301 gtgccaactg ttgaactcag aaatgattgg gtgaacaaat tgtgtaagct
2351 acccatggaa cacattaaaa catttgaaaa agctatgatt caaccaggat
2401 tcccagttgt tatatttgat gactacacta aattgccacc tggttacatt
2451 gaagcctatt tgttccacca tgccaacact gaacttttca ttcttactgg
2501 agactcgcgg caaagtgtat atcatgagtc caacaatgaa gcatacattg
2551 cctcattaga tgaagccgtc gcttattatg ctaactactg tggattttac
2601 ctaaatgcta cacacagaaa tgttcgcagt ttggccaata agctaggtgt
2651 ttacagtgag aaagaaggtc acctcaaaat tacctttgcc tcaaatgctc
2701 tacaaaagtg caaagtgcca attttggtgc cctctcaaat gaagaagagt
2751 gctatgcaag acatagggca caaagccatg acctacgctg ggtgtcaagg
2801 gcttactgca ccgagagtcc aaattttgct tgacaaccac acacaacact
2851 gctcagacag ggtgctgtac acttgtctct ccagagctgt ggattccatc
2901 cactttatca atacaggccc aaacaattct gaattttggg acaagcttga
2951 ggcaacacca tacctcaaag catttattga tacttacaga gatgagaaaa
3001 cagaaatgct caattctaag cctgctgatg acagtcccgc tgagcctgaa
3051 gctccattga ctcactttcc agtgtcaaac ggcaataact tggaaaagtt
3101 agcttcagcg cttcctgaaa aatttgcaag agagttatat gataaacacc
3151 atggatattc taatacaatc caaactgaaa atccagtggt gcaacttttc
3201 cagcatcaac aagccaaaga tgaaacactt ttctgggcaa caatagaagc
3251 tagactttct attacaactc cggaagccaa cttacgagaa tttgttctaa
3301 agaaagatgt tggagatatc ttgtttttca attaccacaa tgtcatgtgc
3351 ttacctgccg acccagtgga tttcgagcca agaacatggg aaatatgtgc
3401 tgctgaagtt aaaaatacat acttagccaa accaatggct aacttgatca
3451 atgctgctag cagacaatct cctgatttcg acgctaacaa aatttccctg
3501 ttcctaaaat ctcaatgggt caagaaagtg gaaaaattag gtgctgtcaa
3551 gtcaaagcct ggccaaacca ttgcagcttt catgcaacaa acagtgatgt
3601 tgtatgggac catggccaga tacctcagaa agatgagaca aagatttcaa
3651 ccaaaacata ttttcatcaa ttgtgaaaca acaactgata atctgaacca
3701 atttgttaaa caaggttgga actttaacag aacagctcag acaaatgatt
3751 tcacagcttt tgaccaatca caagatggtg caatgcttca atttgaagtc
3801 atgaaggcaa aattcttcaa tatccctgcc gacatcattg aaggatacat
3851 caacatcaaa ttgaacgcca aaatttttct tggcacattg tccattatga
3901 ggttgtctgg tgaaggtcca acttttgatg ccaacacaga atgttcaata
3951 gcatataccg ctacaagata ccatcttgat tctacagtca agcaggttta
4001 tgctggagat gatatggcat tagatggagt tgtccaagaa aaaccctctt
4051 ttaaaaaact acagaacaag cttaaactca cctcaaagac actatttcca
4101 aaacaggtta aaggtgatta tgctgaattc tgtggttgga ctttcactcc
4151 tggtggtatc attaaaaacc ctttgaaaat gcatgcttcc attatgttgc
4201 aagaggcaat cggcaattta cacactgctg ccagatcata tgccattgac
4251 atgaagcatt cataccaaat gggtgatgag ctgcacaatt acttaacacc
4301 agatgaagct gaacaacact tccttgctgt tcggaagttg cacaagttac
4351 accaaggaga agcaatgaga cttggtgaaa agagccctcc aaaagcaaca
4401 cattgagggg ttaagttttc cccagttcga aatggaaaga tcaactctga
4451 ttaatttact tcaattgcac cacttcgagc caaaactcag tgttgaagga
4501 atcatagttg tgcacggaat tgcaggcact gggaaaacca ctttacttag
4551 gactttattt tctgcttacc ctagcttagt tataggttca cctaggcctt
4601 gctatttaga taaacaaaac aaaatttcac aagtttgctt atcttgcttt
4651 cccaataccc attgtgatat tgtcgatgag tatcatttgc tagaaagttt
4701 tctagaacca aaattggcta tctttggtga cccctgtcaa tgcacataca
4751 ttgagagact tagagtccca cattacactt ccttcagaac tcatagattt
4801 ggaaagtcaa ctgctgagat tttgaacaaa ctgtttgacc tcaatatagt
4851 ctcagtcaag aaagaagacg acatcgttga attctttaac ccttttgaag
4901 ttgaccccac tgagcatatc tctgcctctg aagaagaagt cttgggcttt
4951 gtttctgacc aagtggtgac cactagctca gaggaactag caggacttga
5001 gtttgcagaa acaactttct actgcacaac attggccgca gctgttgcta
5051 aaaatcctgc taagactttc atctctctga ctagacacac ccacaaactc
5101 accattgggg aactaaatgc caggtctaac tcctagagct gacctcactg
5151 acacatacaa aatcattgcc attgctttct tgttgtcagc ttgcatttac
5201 ttccaaaata gccactacca acctgttgct ggagacaact tgcaccgttt
5251 gccttttggt ggccaatatc aagacggcac caaaaagata tcttattttc
5301 cacaacagca gtcatacttt cactctggaa acaaattaaa tgtcctcata
5351 cttatcttca ttctcacatt gggtattgtc ctcaccaata aatttagttt
5401 tagctttagt cgtactactc accagcattc ttgctataac acacattcag
5451 caaccaacaa tacacaacca ttgtcaggtc atcattgacg gtgctgcaat
5501 agtcataaca aattgtgaga acacaccaga agtgcttaaa gcaatcaact
5551 tctccccttg gaacgggtta agttttccta aatttgaaaa ttaatattga
5601 gtgttcacaa aatcaacttc aataaacaat catgcctgac acaacacctg
5651 ttgctgccac ttcaagtgca ccacccacag ccaaagatgc tggtgccaaa
5701 gctccttctg acttctcaaa tcccaataca gctcctagtc tcagtgattt
5751 gaagaaagtc aagtatgtct ccaccgtgac ctccgtggcc acaccagctg
5801 aaattgaagc cctaggcaaa atcttcaccg ctatgggcct tgccgccaat
5851 gagactggtc cggccatgtg ggatctagct cgtgcatatg ctgatgtgca
5901 gagttctaaa tcggcacagc tgattggagc taccccttcc aaccctgcac
5951 tatcacgccg agcccttgct gctcagtttg atcgaatcaa tataaccccc
6001 aggcaatttt gcatgtactt tgccaaagtt gtttggaaca tacttctcga
6051 cagcaacatt ccaccagcaa attgggccaa acttggctac caagaagata
6101 caaaatttgc tgcatttgac ttcttcgatg gagtcaccaa ccctgccagc
6151 ctgcagcctg ctgatggtct tatcaggcag ccaaatgaga aagaactagc
6201 tgctcactcc gtagctaagt acggcgcctt ggctaggcaa aagatctcca
6251 caggtaatta tattaccaca cttggagaag tcacacgtgg acacatggga
6301 ggagctaaca ccatgtacgc gatagacgcg ccccctgaac tttaaacact
6351 cgaaacttaa tcagagtggg gttttctaca gtttattttc ctaattattt
6401 ctttgaaaca aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa