Sequence of DPV Pepino mosaic virus
Pepino mosaic virus complete genome, isolate LP-2001
ACC No: AJ606361
Dated: 2005-04-15 | Length: 6448 | CRC: -921345898
!!NA_SEQUENCE 1.0
ID AJ606361 standard; genomic RNA; VRL; 6448 BP.
XX
AC AJ606361;
XX
SV AJ606361.1
XX
DT 07-JAN-2005 (Rel. 82, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE Pepino mosaic virus complete genome, isolate LP-2001
XX
KW coat protein; complete genome; CP gene; RdRp gene;
KW RNA-directed RNA polymerase; TGB1 protein; TGB2 protein; TGB3 protein;
KW TGBp1 gene; TGBp2 gene; TGBp3 gene.
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus.
XX
RN [1]
RP 1-6448
RA Lopez C.;
RT ;
RL Submitted (12-NOV-2003) to the EMBL/GenBank/DDBJ databases.
RL Lopez C., COMAV, Universidad Politecnica de Valencia, Camino de Vera 14,
RL 46022 Valencia, SPAIN.
XX
RN [3]
RX DOI; 10.1007/s00705-004-0438-0.
RX PUBMED; 15592891.
RA Lopez C., Soler S., Nuez F.;
RT "Comparison of the complete sequences of three different isolates of Pepino
RT mosaic virus: Size variability of the TGBp3 protein between tomato and L.
RT peruvianum isolates.";
RL Arch. Virol. 150(3):619-627(2005).
XX
FH Key Location/Qualifiers
FH
FT source 1. .6448
FT /country="Peru:Arequipa"
FT /db_xref="taxon:112229"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Pepino mosaic virus"
FT /isolate="LP-2001"
FT /specific_host="Lycopersicon peruvianum (Peruvian tomato)"
FT 5'UTR 1. .84
FT CDS 85. .4404
FT /db_xref="GOA:Q5K4J4"
FT /db_xref="UniProt/TrEMBL:Q5K4J4"
FT /gene="RdRp"
FT /product="RNA-directed RNA polymerase"
FT /EC_number="2.7.7.48"
FT /protein_id="CAE54474.1"
FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND
FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY
FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVNTRIAYISDSLHFMEPADVTHLFD
FT RCQNLKTLMATVVLPVEAIHRQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLE
FT WLKYSRFIGHDPLTGLKYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN
FT IFHPRHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKLRQLISTAELELYDPDELTH
FT VVNYFTYVSQLSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW
FT KDFSYTIKTDELVITTHTAIGQAICNAAATYKERRQLTQLVKNGTISLADFEQKEPEIT
FT YTEFEPETRPQVDCVTNYNNAVRNLGLSALDEQPQCSSSNSHIPCNEISLAMTDDDNAA
FT AIHEIESLLSEPIIAPQLPALPHKTWASYASDTSSMKNREIENIIAELEISRKENNVQQ
FT TTHDYHAVSDTAQNSGGLPWKAWIPLLNAHGFKGDQLQYSPDGKVIQPIQDINNKTPRS
FT EYPSSIPADLVTTLRNIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCSQSKEWKESFA
FT FKMRHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDTNDCCTVVVPTVELRNDWVNKLC
FT KLPMEHIKTFEKAMIQPGFPVVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVY
FT HESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASNA
FT LQKCKVPILVPSKMKKGAMQDIGHKAMTYAGCQGLTAPRVQILLDNHTQHCSDRVLYTC
FT LSRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDTYRDEKTEMLNSKPADDSPTEPEA
FT PLTHFPVSNGNNLEKLASALPEKFARELYDKHHGYSNTIQTENPVVQLFQHQQAKDETL
FT FWATIEARLSITTPEANLREFVLKKDVGDILFFNYHNAMCLPADPVDFEPRTWEICAAE
FT VKNTYLAKPMANLINAASRQSPDFDTNKISLFLKSQWVKKVEKLGAVKSKPGQTIAAFM
FT QQTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDDLNQFVKQGWNFNRTAQTNDFTAF
FT DQSQDGAMLQFEVMKAKFFNIPADIIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANT
FT ECSIAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFKNLQNKLKLTSKTLFPKQVKG
FT DYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDELHDY
FT LTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKSTH"
FT CDS 4430. .5134
FT /db_xref="GOA:Q5K4J3"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="UniProt/TrEMBL:Q5K4J3"
FT /gene="TGBp1"
FT /product="TGB1 protein"
FT /protein_id="CAE54475.1"
FT /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYVERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIISVKKEDDIVEFFNPFEVDPTEHI
FT SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK
FT LTIGELNARSNS"
FT CDS 5115. .5486
FT /db_xref="UniProt/TrEMBL:Q5K4J2"
FT /gene="TGBp2"
FT /product="TGB2 protein"
FT /protein_id="CAE54476.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKRISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH
FT SCYNTHSATNNTQPLSGHH"
FT CDS 5338. .5598
FT /db_xref="UniProt/TrEMBL:Q5K4J1"
FT /gene="TGBp3"
FT /product="TGB3 protein"
FT /protein_id="CAE54477.1"
FT /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTTHNHC
FT QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFENQY"
FT CDS 5631. .6344
FT /db_xref="GOA:Q8JJF2"
FT /db_xref="InterPro:IPR000052"
FT /db_xref="UniProt/TrEMBL:Q8JJF2"
FT /gene="CP"
FT /product="coat protein"
FT /protein_id="CAE54478.1"
FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
FT 3'UTR 6345. .6408
FT polyA_site 6409
XX
SQ Sequence 6448 BP; 2094 A; 1464 C; 1165 G; 1725 T; 0 other;
AJ606361 Length: 6448 April 19, 2005 08:53 Type: N Check: 3619 ..
1 gaaaacaaaa tataaacaaa tatacaaagt taaactaaca caacataacc
51 acgtggaaaa acagcgaaag cactttacca cattatgtct cgtgtcagga
101 atactttgga aaagatcaga gacccacaag tacagtccag catttgcgaa
151 gccgcatatc aacatgttcg acccgtactt aaagaatctc taatcaattg
201 tccttatgcg cttaatgatt atgaagcaga cacccttgag aatcttggtg
251 tcacaattaa tccccacgca atccaaacac acacacatgc cgcagctaaa
301 gtagttgaaa atcgtatgct tgaaatcgtt ggacatcact tgccaaaaga
351 tgaaaaggta acttttatct tcctcaaacg tagcaagctg cgttacatga
401 gaagagctgc tgtgcataaa gatgtctttg tcaatcataa cattgaacca
451 aaagacttct tcaggtatga tgaagagtct acatcaacta gcttttccgt
501 taatacgaga atcgcataca tttcagattc tctacacttt atggaacctg
551 ctgatgtgac tcacttgttt gaccgttgcc aaaaccttaa aacattaatg
601 gcaactgttg tactacctgt tgaagctata cacagacaga catccctatt
651 ccctgccatt tactccatta actacaatga agaaggcttt gagtacatcc
701 caggatcaca cggtggtggg gcatatttcc acaaatatga aaccctagaa
751 tggctcaaat actctagatt cattggacat gatccattga ctggtttaaa
801 atacaccatt acaattcaaa tggtagagag tcttggtgcc aaccaccttt
851 tccttttcca aagaggaaac tttgagacgc cgttataccg gacgtttcaa
901 aagaatagtt ttgtgacatt cccaaatata tttcatcccc gacatgtcaa
951 tgccacaaaa cctatgccta gatcaagggc catacagctg tacctatatg
1001 tgaaatcagt aaataaagtt acgcaaagag acatatttgc taaacttaga
1051 caactgattt ccactgctga actagaattg tatgaccctg atgaactcac
1101 gcatgttgta aattatttca catatgtgtc acaactgtca tctatcaatg
1151 attatgacaa catgctcaaa tccagtttct ttaaaaaact ggtggcaccc
1201 atgcaacacg actggaggtg catgattgaa ttcttccggg gaaagagtga
1251 cttcaatcaa ctgctaacag ctcttcaatg gaaagatttt tcatacacta
1301 ttaagactga tgagcttgta atcactacac acactgctat aggacaagca
1351 atatgcaatg cagctgctac atataaagaa agaaggcagc tgactcaatt
1401 ggtcaaaaat ggtacaatat ccttagcaga ttttgaacag aaagaacctg
1451 aaataaccta cactgaattt gagcctgaaa ctaggcccca ggtggactgc
1501 gttactaatt acaataatgc agtcagaaat ttaggtcttt ctgcactcga
1551 tgaacagcct caatgttcat cttctaacag tcatataccc tgcaatgaaa
1601 tatctctagc aatgactgat gatgataatg ctgcggccat tcatgaaatt
1651 gaatctctat tgtctgaacc gataatagct cctcaactcc cagcattgcc
1701 acacaagaca tgggctagtt atgcttccga cacatcatct atgaagaacc
1751 gtgaaattga gaacataatt gctgagcttg aaatctcacg gaaggaaaac
1801 aatgtgcagc aaactactca tgattaccat gctgtttctg atactgctca
1851 aaactctgga ggtctcccat ggaaagcatg gattccactt ctgaatgcac
1901 acggctttaa gggagaccaa cttcaataca gtcctgatgg caaagtgatt
1951 cagccaattc aggacatcaa taacaaaaca ccaagatctg agtacccatc
2001 cagtattcct gcagatcttg taactacact gcgaaacatt aaaagagcag
2051 tgtatgccat tcctattagc catcgaaggg caagtgctta cagctctgat
2101 atcaagaaca ataggactgg caaattgctt tgctcccaat caaaagaatg
2151 gaaggaaagt tttgctttca aaatgcgaca tgaagacatc gttaaatctg
2201 gagtggtcat tcatggctgt ggtggctctg gaaaatcaca agcattacaa
2251 aactttctca gaactcttgg cgacaccaac gactgttgca cagtggtggt
2301 gccaactgtt gagctcagaa atgattgggt gaacaaattg tgcaaactac
2351 ccatggaaca cattaaaaca tttgaaaaag caatgattca accaggattc
2401 ccagtcgtta tctttgatga ctacaccaaa ttgccacctg gttacattga
2451 agcctatttg ttccaccatg ccaacaccga acttttcatt ctcactggag
2501 actcgcggca aagtgtatat catgagtcca acaatgaagc atacattgcc
2551 tccttagatg aagccgttgc ttactatgct aactactgcg gattttacct
2601 aaatgctaca catagaaatg ttcgcagttt agccaataag ctaggtgttt
2651 acagtgagaa agaaggccac ctcaaaatta cctttgcctc aaatgctcta
2701 caaaagtgca aagtgccaat tttagtgcct tctaaaatga agaaaggtgc
2751 catgcaagac atagggcaca aagccatgac ctacgctggt tgtcaagggc
2801 ttactgctcc aagagtccaa attttgcttg acaaccacac acaacactgc
2851 tcagacaggg tgctgtacac atgtctctct agagctgttg attccatcca
2901 ttttatcaat acaggtccaa acaattctga attttgggac aagctcgagg
2951 caacaccata cctcaaagca tttattgata cttacagaga tgagaaaaca
3001 gaaatgctca attctaaacc tgctgacgac agtcctactg agcctgaagc
3051 tccattgact cactttccag tgtccaacgg caacaacttg gaaaagttag
3101 cttcagcact tcctgaaaaa tttgcaaggg agttgtatga caaacaccat
3151 gggtattcta acacaatcca aactgaaaat ccagtggtac aacttttcca
3201 gcatcaacaa gccaaagatg aaacgctttt ctgggcaaca atagaagcta
3251 gactttctat tacaactccg gaagccaatt tacgagaatt tgtgctgaag
3301 aaagatgttg gagacatctt gtttttcaac taccacaatg cgatgtgctt
3351 acccgctgat ccagtggact ttgagccaag aacatgggaa atatgtgctg
3401 ctgaagttaa aaatacttac ttagccaaac caatggctaa cctgatcaat
3451 gctgctagca gacaatctcc tgattttgat actaataaaa tttccctgtt
3501 cttaaaatct caatgggtca aaaaagtgga aaaattaggt gctgtcaaat
3551 caaagcctgg ccagaccatc gcagctttca tgcaacaaac agtgatgttg
3601 tatgggacca tggccagata cctcagaaag atgagacaaa gattccaacc
3651 aaagcatatt ttcattaatt gtgagacaac aacggatgat ctgaaccaat
3701 ttgttaaaca aggttggaac tttaacagaa ctgctcagac aaatgatttc
3751 acagcttttg accaatcaca agatggtgca atgcttcaat ttgaagtcat
3801 gaaggcaaaa ttcttcaata tccctgctga cattattgaa ggatacatca
3851 atatcaaatt gaacgccaaa attttccttg gtacattgtc cattatgagg
3901 ttgtctggtg aaggtccaac ttttgatgct aacacagaat gttcaatagc
3951 atatactgct acaagatacc atctcgattc cacagtcaag caggtttatg
4001 ctggagatga catggcatta gatggagttg tccaagaaaa accctctttc
4051 aaaaatttac agaacaagct taaactcacc tcaaagacac tatttccaaa
4101 gcaggtcaaa ggtgattacg ctgaattctg tggttggact ttcactcctg
4151 gtggcatcat taaaaaccct ttgaaaatgc atgcttcaat catgttgcaa
4201 gaggcaattg gcaatttgca cactgctgcc agatcatatg ccattgacat
4251 gaagcattca taccaaatgg gtgatgagct gcatgattac ttaacaccag
4301 atgaagctga acaacatttc cttgctgttc ggaaattgca caagctacac
4351 caaggagaag caatgagact tggtgaaaag agccctccaa aatcaacaca
4401 ttgaggggtt aagtttttcc cagtttgaaa tggaaagatc aactctgatt
4451 aatttacttc aattgcacca cttcgagcca aaactcagtg ttgaaggaat
4501 catagttgtg cacggaattg caggaactgg gaaaaccact ttacttagga
4551 ctttattttc tgcttaccct agcttagtta taggttcacc taggccttgt
4601 tatttagaca aacaaaataa aatttcacaa gtttgcttat cttgctttcc
4651 caatacccat tgtgacattg ttgatgagta tcatttgcta gaaagtttcc
4701 cagaaccaaa attggctatc tttggtgacc cctgtcaatg cacatacgtt
4751 gaaagactta gagtcccaca ttacacttcc ttcagaactc atagatttgg
4801 aaagtcaact gctgagattt tgaacaaact gtttgatctt aatataatct
4851 cagttaagaa agaagacgac attgttgaat tctttaaccc tttcgaagtt
4901 gaccccactg aacatatctc agcctctgaa gaagaagtct tagactttgt
4951 ttctgaccaa gtggtgacca ccagctcaga agaactagca ggacttgaat
5001 ttgctgaaac aactttctac tgcaccacac tggcagcagc cgttgctgaa
5051 aatcctgcta agactttcat ctctctgacc agacacactc acaaactcac
5101 cattggggaa ctaaatgcca ggtctaactc ctagagctga cctcactgac
5151 acatacaaaa tcattgccat tgccttcttg ttgtcagcct gcatttactt
5201 ccaaaatagc cactaccaac ctgttgctgg agacaatttg caccgtttgc
5251 cttttggtgg ccaatatcaa gacggcacta aaaggatttc ttattttcca
5301 caacagcagt catactttca ttctggaaac aaattaaatg tcctcatact
5351 tatcttcatt ctcacattgg gtattgtcct caccaataaa tttagtttta
5401 gctttagtcg tactactcac cagcattctt gctataacac acattcagca
5451 accaacaaca cacaaccatt gtcaggtcat cattgacggt gctgcaatag
5501 tcataacaaa ttgtgagaac acaccagaag tacttaaggc aatcaacttc
5551 tccccctgga acgggttaag ttttcctaag tttgaaaatc aatattgagt
5601 gttcacaaca atcaacttca acaaacaatc atgcctgaca caacacctgt
5651 tgctgccact tcaagtgcac cacctacagc caaagatgct ggtgccaaag
5701 ctccttctga cttctcaaat cccaatacag ctcctagtct cagtgatttg
5751 aagaaagtca agtatgtctc cacagtgact tccgtggcca caccagctga
5801 aattgaagcc ctaggcaaaa tcttcaccgc tatgggcctt gccgccaatg
5851 agactggtcc ggcgatgtgg gatctagctc gtgcgtatgc tgatgtgcag
5901 agctctaaat ccgcacagct gattggtgct accccttcca accctgcatt
5951 atcacgccga gcccttgctg ctcagtttga tcgaatcaat ataacaccca
6001 ggcaattttg catgtacttt gctaaagttg tttggaacat ccttctcgac
6051 agcaatattc caccagcaaa ttgggctaaa cttggttacc aagaagatac
6101 aaaatttgct gcatttgact tcttcgatgg agtcaccaac cctgccagcc
6151 tgcagcctgc tgatggtctc atcaggcaac caaatgagaa agaactagct
6201 gctcactcag tagctaaata tggcgccttg gctaggcaaa agatctccac
6251 aggtaattat attaccacac ttggagaagt cacacgtgga cacatgggtg
6301 gagctaacac catgtacgcg atcgacgcac cccctgaact ttaaacactc
6351 gaaacttaat cagagtgggg ttttctacag tttattttcc taattatttc
6401 tttgaaacaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa