Sequence of DPV Cacao swollen shoot virus
Cacao swollen shoot virus ORF1, ORF2, ORF3, ORFX and ORFY
ACC No: AJ608931
Dated: 2005-01-22 | Length: 7024 | CRC: -831480945
!!NA_SEQUENCE 1.0
ID AJ608931 standard; circular genomic DNA; VRL; 7024 BP.
XX
AC AJ608931;
XX
SV AJ608931.1
XX
DT 25-NOV-2004 (Rel. 81, Created)
DT 22-JAN-2005 (Rel. 82, Last updated, Version 2)
XX
DE Cacao swollen shoot virus ORF1, ORF2, ORF3, ORFX and ORFY
XX
KW nucleic acid-binding protein; ORF1; ORF2; ORF3; ORF4; ORFX; ORFY;
KW polyprotein.
XX
OS Cacao swollen shoot virus
OC Viruses; Retroid viruses; Caulimoviridae; Badnavirus.
XX
RN [1]
RP 1-7024
RA Muller E.;
RT ;
RL Submitted (25-NOV-2003) to the EMBL/GenBank/DDBJ databases.
RL Muller E., CIRAD, UMR BGPI, TA 41/K, Campus International de Baillarguet,
RL 34398 Montpellier cedex 5, FRANCE.
XX
RN [2]
RA Muller E., Sackey S.;
RT "Four new full sequences of cacao swollen shoot virus : a PCR full length
RT cloning strategy and a variability analysis";
RL Unpublished.
XX
RN [3]
RA Muller E., Sackey S.;
RT "Molecular variability analysis of five new complete cacao swollen
RT shootvirus genomic sequences";
RL Arch. Virol. 50(1):53-66(2005).
XX
FH Key Location/Qualifiers
FH
FT source 1. .7024
FT /country="Ghana:New Juaben"
FT /db_xref="taxon:31559"
FT /mol_type="genomic DNA"
FT /virion
FT /organism="Cacao swollen shoot virus"
FT /specific_host="Theobroma cacao"
FT CDS 294. .725
FT /note="ORF1"
FT /product="hypothetical protein"
FT /protein_id="CAE76626.1"
FT /translation="MSSRWENSIQEWYEKSHTANLEYLDLASTSKVTNNQLAHNLAVTF
FT DRVNLGNRVFIKNLKQIQESILELNTRIDTVEVALKRLTKQFRENKPLSESEVKRLVEE
FT IAQQPKIVEKQALEISQQLELKLEKVEKLLHKLDQWVGQ"
FT CDS 722. .1159
FT /note="ORF2"
FT /product="nucleic acid binding protein"
FT /protein_id="CAE76627.1"
FT /translation="MSESPSYQEALKEAEKIDPPAIGLTTSSGVTAVQGFRTVIKQNNV
FT QICLLAAIADKLEELVQDQKKARKDKAKEVAIPEDLITKLQGLSIQEKGEAKVTRKPEP
FT KGTLFGFKDPYKILAAEKAKITPKLVKEKKDESSKTATSNS"
FT CDS 1125. .6668
FT /note="ORF3"
FT /product="polyprotein"
FT /function="coat protein, RNaseH, RTase"
FT /protein_id="CAE76628.1"
FT /translation="MSRARPQPPIPSVTSTISEQNREGPLYEDQIRDYRRSQRRIFNLR
FT RNARRLRRSMMGSRYQETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYT
FT HRSEESVLCVGGNQVDRAFIQPESLEQLQRTGMSFIHIGILQVRIQILHRQEEGTMALV
FT VFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGDFARNVQLSILTRGYENWQN
FT GEANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGVKAIAGKKMNLQHLRNQQWIL
FT RPPQADITPMQPRSVETRNLVDGSISIRFHDYEAATSTSRPHYNEEDEEVESETESEIR
FT EHTVAVWIGEEEVPDQTGRKKVWEESSNGNGRFFRYYTPPPTSDEQIIATGWGSDDDYE
FT DEIPPKWDESPDEEGSSKTTWDQEEKEEEDEYDPNIYRAYLQKEEDEWQEIAASLQEEM
FT EMEYPRRRPQTETVFSETVDYTPPGDTLMTPVGYPPASSSRSTVTTPSRPPLFEGRVTH
FT VPRFLKRDDYTEWWQLPSSQGTTGALFVMPKQIGLFHDVFSRWESITKNYVAAQSFTDP
FT TEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQIKRVFSLEDP
FT ASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFLGTELSEKLWMKMPP
FT ELGNRMKEAFQKEYSGNEVGVFPRILFAYRYLEQECKDAAFKRSLKSLSFCKDMPLTGY
FT YDKTPKYGMRKSKTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNNKRD
FT VKRVAIFEGINLPEGFDIVSVEEGEDDSDAIYSISENENGEELDAEVVQEKVFMMREED
FT QSYWLGKTNHWTAMVRVSSQQYYCLHQWEHNKEITVVAHINCHFCKQPTQLRSRIHCPT
FT CKLTSCFMCAPIYCNITVQQQPKPPTPFNTNTLLQQQAAYIQWLEGENQRLTEAVEFYK
FT KEAADLRLEKELEKDRKDLEPKIQDRGKRVQILDPEVGPSDDEQIAYLEEDTVSRIIGH
FT TVEEQQEVKKPVKRGNMLYNLDVVLLIPEVGRPIKVKAILDTGATTCCININSVPKTAI
FT EQNTFLVQFRGINSTQSVDKKLKYGRMTISNHQFRIPYCYAFPLSLGDGIEMILGCNFI
FT RGMYGGLRIEGHTITFYKNVTTIQTSLAAVMVGGTTTSELGEEGTEPIFEIEEETEEFD
FT SEVHQQIVSHVAAQAQQQKLDPKLQQLMERLKDQGFIGENPMQHWAKNKILCRLDIKNP
FT DLIIEDKPIKHLTPAMEKQFQKHVKALLDIGVIRPSKSKHRATAFIVESGTVIDPVTKK
FT TIHGKERMVFNYKRLNDNTEKDQYSLPGIQTILKRVGNKKIFSKFDLKSGFHQVAMAEE
FT SIPWTAFWVPQGLYEWLVMPFGLKNAPAVFQRKMDQCFKGTEEFIAVYIDDILVFSETM
FT AEHTKHIGIMLTICQENGLVLSPNKICLAQREIEFLGTIISQGQMKLQPHVIKKIVNKA
FT DMELETTRGLRSFLGLLNYARIYIPNLGKKLSPLYAKTSPTGEKKFNRQDWHLIKEIKD
FT MVQKLPNLAIPPARCCIIIESDGCMEGWGAVCKWKLAKEDSRTTEKICAYASGKFGIIK
FT STIDAEIFALIKALESFKIFYLDKKHLVVRTDCQAIVTFYNKTSTHKPSRIRWITFSDY
FT ITGLGVQVTIEHINGKENQLADTLSRLVYTTWSQSQAHLPEEEEPEKSPHLSLAALAIP
FT IAWPMTASYSKRRTSLLTGDSPWQQNKPSQRSSIASRSKQPEKHSWPYETYRAYCTSNE
FT TIWPQLPHVTTGPVIDCQLPNKIRPHSTNMLA"
FT CDS 2308. .2583
FT /note="ORFX"
FT /product="hypothetical protein"
FT /protein_id="CAE76629.1"
FT /translation="MMIMRMKSPQNGMKVLMKKDQVRQLGIRKKKKKKMNMIPTSIGLI
FT YKRKKMSGKKSPPAYKKKWKWNIHGGGHRRRQYSLKQLTIHHLVTH"
FT CDS 6308. .6703
FT /note="ORFY"
FT /product="hypothetical protein"
FT /protein_id="CAE76630.1"
FT /translation="MEPVPSSPAGGRRAGEVPTSQLSGASYPYSLAYDGLLQQKKDVIT
FT HGRLTLATEQAISAQLYRIEEQAARKALMALRDLQGVLHFKRNYLAATATRDNWASDRL
FT PAAQQDSAALDQHAGVINAIIEKAVQP"
XX
SQ Sequence 7024 BP; 2381 A; 1528 C; 1581 G; 1534 T; 0 other;
AJ608931 Length: 7024 January 25, 2005 09:07 Type: N Check: 8427 ..
1 tggtatcaga gcttggtttt agcaatggtc atgtccggct aagttagtca
51 gactaggttc agggaaagag tgaggtaacc gttaggcgtc aaaatactgt
101 tccaaaatac tattcaccaa accactaggg gtatcctgtt tatgtgaaaa
151 agacgtaacc cagacggaaa gtacccatga gggggaaaac ttggggaaaa
201 ggtgatcaat aaacagaaac caaactattc ctcgtatgct ctacggttgc
251 agccacggct gaacctccgt atcagaaaag gaaaatttgg cgtatgtcta
301 gccgatggga aaatagtatc caggaatggt atgagaagtc tcacactgcc
351 aaccttgagt accttgacct agcctctacc agtaaagtga ccaacaacca
401 actagctcat aacctcgcag taacctttga tagagtcaac ttaggaaacc
451 gagtcttcat taaaaacctt aaacaaatcc aagagtctat cctagaacta
501 aataccagaa tcgacactgt agaagtagcc ttgaagaggc taaccaagca
551 gttccgagaa aacaaaccac tgtctgaatc tgaagtaaag agactagtag
601 aagagatagc ccagcaaccc aaaattgttg agaaacaggc actggaaata
651 tctcaacagt tagaactcaa gttagaaaaa gtggaaaaac ttctacacaa
701 gcttgaccag tgggttggtc aatgagtgaa agtccctctt accaagaagc
751 acttaaggaa gctgaaaaga tcgaccctcc agcgattgga ttgaccacat
801 ccagtggagt gactgcggtc caaggcttca ggaccgtcat caaacaaaac
851 aacgtccaga tttgcctact tgcggctata gcagacaaac ttgaagaact
901 ggtgcaagat cagaagaaag caagaaaaga caaggctaag gaggtagcca
951 ttcctgagga tcttatcaca aaactccaag ggttatccat ccaggagaaa
1001 ggtgaagcaa aggtcacaag aaaaccagag ccaaaaggaa cactgtttgg
1051 attcaaagat ccttacaaaa ttttggcagc agaaaaggct aagatcacac
1101 caaagcttgt aaaagaaaag aaggatgagt cgagcaagac cgcaacctcc
1151 aattcctagt gtgacatcta ccattagtga acagaacaga gaagggcctc
1201 tttatgagga tcaaatcaga gactacagaa ggagtcagag gaggatcttc
1251 aacctaagaa ggaatgccag aaggttgaga agatcaatga tggggtctag
1301 ataccaggag accctagaac aagaaattga tccacagaca acactgaggt
1351 tgtccatgca agaaagagcg cgattagtac cagctgaagt actgtacaga
1401 tcacgacgag acactgttca ccacagggtc tacacccatc gctctgagga
1451 atccgtccta tgtgtcggcg gaaatcaagt tgacagggcc tttattcagc
1501 ctgaaagttt agagcaactt cagaggactg gaatgtcttt tattcatata
1551 ggaatcctgc aagttaggat tcaaatcctg catcgtcaag aagaaggtac
1601 catggcttta gttgtcttcc gtgacaacag atggtctggg gaccagtcta
1651 tcttcgcaca aatggagata gatctaacta aaggcagcca gttggtattt
1701 gtcataccgg ataccatgat gacgatcgga gattttgccc ggaacgtaca
1751 actatcaatc ctcacacgag gatatgagaa ttggcaaaat ggagaagcta
1801 accttttaat cacacgtggc atgacaggac gactatccaa cacacctaat
1851 gtcgcctttg cctaccaaat tgccagcgcg acagattatc tggcaagcca
1901 cggagtaaaa gccatcgcag ggaaaaagat gaacttacaa cacctgcgaa
1951 atcaacagtg gattctacga ccaccgcaag ctgacatcac accgatgcaa
2001 ccaagatcgg tagaaaccag gaacctggta gatggcagca tttccatcag
2051 attccatgat tatgaggcag ccacctcaac atcaagaccc cattacaacg
2101 aggaagatga agaagtggag tctgaaacag aatctgaaat aagagaacac
2151 actgtagcag tctggattgg ggaagaagaa gttccagacc aaactggaag
2201 aaagaaagta tgggaagaat ccagtaatgg aaatggaagg ttcttccggt
2251 actacactcc tccaccaaca tctgatgaac aaatcatagc cactggttgg
2301 ggaagcgatg atgattatga ggatgaaatc cccccaaaat gggatgaaag
2351 tcctgatgaa gaaggatcaa gtaagacaac ttgggatcag gaagaaaaag
2401 aagaagaaga tgaatatgat cccaacatct atagggctta tttacaaaag
2451 gaagaagatg agtggcaaga aatcgccgcc agcttacaag aagaaatgga
2501 aatggaatat ccacggcgga ggccacagac ggagacagta ttctctgaaa
2551 cagttgacta tacaccacct ggtgacacac tgatgacacc tgtcggatat
2601 ccaccggcct cgtcatcaag atcaacagta acaacaccaa gtaggccccc
2651 tttatttgaa ggaagggtta cacacgtgcc aagattctta aaacgggatg
2701 actacacaga atggtggcaa ctaccatcat cccaaggcac aactggggca
2751 ttatttgtga tgcccaaaca aataggccta tttcatgatg tcttctccag
2801 atgggagtcc atcaccaaaa actatgttgc ggcccaaagt ttcacggacc
2851 caacagaaaa gatggagttc atggaaaact tacttggaga aacagaaaaa
2901 ctaacctgga tccaatggag aatgaattat gaggctgagt accagcagct
2951 gttaacccaa gctgatggac ggcaagggac ccagaatatc ttgtcccaaa
3001 ttaagagagt cttctctcta gaagaccccg cctcaggatc cacgaggata
3051 caagatgctg catacagaga ccttgaaaga ttgacctgcc acaacataaa
3101 agatatcgtt cagttcctga atgattatgg gcggttagca gcaaaaagtg
3151 ggcgactgtt tctaggaaca gagctcagtg aaaaactatg gatgaagatg
3201 ccaccagaac tagggaatcg catgaaggaa gcatttcaaa aggaatactc
3251 aggcaatgaa gtaggagtct tcccgcgtat cttgttcgcg tacagatact
3301 tagaacaaga atgcaaagat gcagcgttta agcgcagcct gaagtcgttg
3351 agtttctgta aggacatgcc gttgacaggt tactatgata aaacacccaa
3401 atacggcatg aggaagtcaa aaacttacaa aggaaagcca cacgcatcac
3451 atgcaagagt agaaaagaga aagcacttaa tcaggaataa aaagtgcaag
3501 tgctatctgt gtggagatga aggacatttt gccagagaat gccctaataa
3551 caaaagagat gtcaagagag tagccatttt tgaaggtatc aatcttcctg
3601 agggtttcga cattgtctca gtagaagaag gggaagatga ctcagatgct
3651 atttatagca tatctgagaa tgaaaatggg gaagaacttg acgcagaagt
3701 agtccaagag aaggtcttca tgatgcgaga agaagaccaa tcctactggc
3751 taggaaaaac aaatcactgg acagcaatgg tgcgagtcag cagccaacag
3801 tattattgct tgcaccaatg ggagcacaac aaggagatca cggtggtggc
3851 ccacatcaac tgccacttct gtaagcagcc cactcaactg aggagtcgaa
3901 tacactgtcc cacgtgtaaa ctcaccagct gcttcatgtg tgcccctatc
3951 tactgcaata taacggtcca acagcagcct aaaccgccta cgccattcaa
4001 caccaatacc ttgcttcaac aacaagcggc gtatatccaa tggttagaag
4051 gagaaaacca gcggttaaca gaggcagttg aattttataa aaaggaagct
4101 gcagatctaa ggctcgaaaa agaattggaa aaagatagaa aagatttaga
4151 gccaaaaata caagacaggg ggaaaagggt tcaaattctt gatccagaag
4201 taggaccctc tgatgatgaa caaatagcat atcttgagga agataccgtt
4251 agccgaatta tcggccatac tgtggaagag caacaagagg tcaaaaaacc
4301 agtcaaaagg gggaacatgt tatacaacct cgacgtggtt ttacttatcc
4351 ctgaagttgg aagacctatc aaggttaaag ctatccttga taccggcgca
4401 actacctgtt gcatcaacat caactctgtt cccaagacag caattgaaca
4451 gaacactttt ctggttcaat tcagaggcat taattccacg caatcagtgg
4501 ataaaaagct aaaatacggg cggatgacta ttagcaacca ccagttccgg
4551 atcccgtact gttatgcctt tcctctatct cttggagacg gaatagaaat
4601 gatcctcggg tgtaacttca tccgtggaat gtatggcggt ttgaggattg
4651 aaggtcacac aatcaccttc tacaaaaacg tcaccactat tcaaaccagc
4701 cttgctgctg taatggttgg tggtacaacc acttctgagt tgggggagga
4751 aggtactgaa cccatttttg aaattgaaga agaaacagaa gagtttgact
4801 cagaagtcca tcaacaaatt gtgagtcatg ttgcagccca agcccaacaa
4851 caaaaactag acccaaaact ccaacaacta atggaacggt taaaggatca
4901 gggctttatt ggggaaaatc cgatgcaaca ctgggctaaa aacaagatcc
4951 tgtgtagatt ggatatcaag aatccagatc ttatcataga agacaagccc
5001 attaaacact taacaccggc tatggagaag caattccaga agcatgtcaa
5051 agctctcctg gacattggtg ttatcaggcc tagcaagtca aaacacaggg
5101 ctacggcctt catagtagaa tcaggcactg ttattgatcc agtaacaaag
5151 aagaccatac acggcaaaga aagaatggtc tttaactaca aacgcctgaa
5201 tgacaatacg gagaaggatc aatactcgct acccggtata cagaccatcc
5251 tgaagcgagt aggcaacaaa aaaattttca gcaagtttga tttaaaatcg
5301 ggcttccatc aggttgccat ggcagaagag tccatccctt ggactgcttt
5351 ttgggtaccg cagggcctat acgagtggtt agttatgccc tttgggctca
5401 aaaacgctcc tgcagtattt caaagaaaaa tggaccaatg tttcaaaggc
5451 acagaagaat tcatagctgt gtatattgat gacatcttgg tcttcagcga
5501 gactatggcg gaacacacca agcatattgg aatcatgcta acaatctgcc
5551 aagaaaatgg gctggtccta agcccaaata aaatatgtct tgctcaacga
5601 gagattgaat ttttgggcac aatcatctct caaggtcaaa tgaagcttca
5651 gcctcatgtc ataaagaaga tagtcaacaa ggcagatatg gagctcgaaa
5701 caactagggg cctaagatca tttttgggcc tcctgaacta tgcccgaatc
5751 tacataccca atctggggaa gaagctaagt ccactatatg ccaaaaccag
5801 tcccaccgga gaaaagaagt ttaatcgaca ggattggcat ctgataaaag
5851 aaattaaaga tatggtccaa aagctcccaa acctcgctat cccaccagca
5901 agatgctgca ttatcataga aagcgatggt tgtatggaag gatggggggc
5951 cgtatgcaag tggaaattag caaaagaaga ttcccgcact actgaaaaga
6001 tatgtgccta cgctagtgga aaattcggca taatcaagtc cacaattgac
6051 gccgagattt tcgcactcat aaaagcactg gaatccttta aaatcttcta
6101 tctggacaaa aaacatttgg tggtgcgtac tgactgtcag gcgatagtga
6151 cattttacaa caagacaagc actcacaagc cttctcgtat acgttggatc
6201 accttttccg actatataac ggggttagga gttcaagtta ctatcgaaca
6251 cataaacgga aaggagaacc agctagcaga tacactaagc agactagtgt
6301 acaccacatg gagccagtcc caagctcacc tgccggagga agaagagccg
6351 gagaagtccc cacatctcag cttagcggcg ctagctatcc ctatagcttg
6401 gcctatgacg gcctcctaca gcaaaagaag gacgtcatta ctcacgggag
6451 actcaccctg gcaacagaac aagccatctc agcgcagctc tatcgcatcg
6501 aggagcaagc agccagaaaa gcactcatgg ccctacgaga cctacagggc
6551 gtactgcact tcaaacgaaa ctatttggcc gcaactgcca cacgtgacaa
6601 ctgggccagt gatagactgc cagctgccca acaagattcg gccgcactcg
6651 accaacatgc tggcgtgatt aacgccatta tcgaaaaggc tgtccaaccc
6701 tagtttggac gatagtgtgc aataattaag tgtgctttta ctttccagct
6751 gtaactcatt atagagtaga catagtgatt gacgatgggg cccaaggagc
6801 acccggatta ctactctacc atctataaat gagagtgtgc aaggcttagc
6851 catcagagag gaagagatat ccatcctgat tctaagcatt ctagagcttg
6901 taagttttct tttgagaaat aaagaatctt cttagtgatt atttctttgt
6951 ttcccctggg aaaattttaa acagtttctg ttattctgtt taatcctgtt
7001 ccacatttcc tctgcaaaaa tact