Sequence of DPV Cacao swollen shoot virus
Cacao swollen shoot virus complete genome, isolate Peki
ACC No: AJ609019
Dated: 2005-04-15 | Length: 7141 | CRC: 182545047
!!NA_SEQUENCE 1.0
ID AJ609019 standard; circular genomic DNA; VRL; 7141 BP.
XX
AC AJ609019;
XX
SV AJ609019.1
XX
DT 25-NOV-2004 (Rel. 81, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE Cacao swollen shoot virus complete genome, isolate Peki
XX
KW aspartyl protease; capsid protein; complete genome;
KW nucleic acid-binding protein; ORF1; ORF2; ORF3; ORF4; ORFX; ORFY;
KW polyprotein; reverse transcriptase; ribonuclease H.
XX
OS Cacao swollen shoot virus
OC Viruses; Retroid viruses; Caulimoviridae; Badnavirus.
XX
RN [1]
RP 1-7141
RA Muller E.;
RT ;
RL Submitted (25-NOV-2003) to the EMBL/GenBank/DDBJ databases.
RL Muller E., CIRAD, UMR BGPI TA 41/K, Campus International de Baillarguet,
RL 34398 Montpellier cedex 5, FRANCE.
XX
RN [2]
RA Muller E., Sackey S.;
RT "Four new full sequences of Cacao swollen shoot virus: a PCR full length
RT cloning strategy and a variability analysis";
RL Unpublished.
XX
RN [3]
RA Muller E., Sackey S.;
RT "Molecular variability analysis of five new complete cacao swollen
RT shootvirus genomic sequences";
RL Arch. Virol. 50(1):53-66(2005).
XX
FH Key Location/Qualifiers
FH
FT source 1. .7141
FT /country="Ghana:Peki"
FT /db_xref="taxon:31559"
FT /mol_type="genomic DNA"
FT /virion
FT /organism="Cacao swollen shoot virus"
FT /specific_host="Theobroma cacao"
FT /isolate="Peki"
FT CDS 296. .727
FT /db_xref="InterPro:IPR005479"
FT /db_xref="InterPro:IPR010746"
FT /db_xref="UniProt/TrEMBL:Q5TJI7"
FT /note="ORF1"
FT /product="hypothetical protein"
FT /protein_id="CAE81277.1"
FT /translation="MSSRWEDSIQEWYEKSHTANLEYLDLASTSKVTNNQLAHNLAVTF
FT DRVNLGNRVFIKNLKQIQESILELNTRIDTVEVALRRLTKQFRENKPLSESEVKKLVEE
FT IAQQPKIVEKQALEISQQLELKLEKVEKLLHKLDQWVGQ"
FT CDS 724. .1161
FT /db_xref="UniProt/TrEMBL:Q5TJI6"
FT /note="ORF2"
FT /product="nucleic acid-binding protein"
FT /protein_id="CAE81278.1"
FT /translation="MSESPSYQEALKEAEKIDPPAIGLTTSSGVTAVQGFRTVIKQNNV
FT QICLLATIADKLEELVQDQKKARKDKAKEIAIPEDLITKLQGLSIREKGEAKVTRKPEP
FT KGTLFGFKDPYKILAAEKAKITPKPVKEKKDESSKTATSSS"
FT CDS 1127. .6577
FT /db_xref="GOA:Q5TJI5"
FT /db_xref="InterPro:IPR000477"
FT /db_xref="InterPro:IPR001878"
FT /db_xref="InterPro:IPR001969"
FT /db_xref="UniProt/TrEMBL:Q5TJI5"
FT /note="ORF3"
FT /note="putative capsid protein, aspartyl protease,
FT ribonuclease H and reverse transcriptase"
FT /product="polyprotein"
FT /protein_id="CAE81279.1"
FT /translation="MSRARPQPPVPSVTSTTSEQNREGPLYEDQIRDYRRSQRRIFNLR
FT RRARRLRRSMMGSRYQETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYT
FT HRSEESVLCVGGNQVDRAFIQPESLEQLQRTGMSFIHIGILQVRIQILHRQEEGTMALV
FT VFRDNRWSGDQSIFAQMEIDLTKGSQLVFVIPDTMMTIGDFARNVQLSILTRGYENWQN
FT GEANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGVKAIAGKKMNLQHLRNQQWIL
FT RPPQADITPMQPRSVETRNLVDGSISIRFHDYEAATSTSRPHYNEEDEEVESETESEIR
FT EHTVAVWIGEEEVPDQTGRKKVWEESSNGNGRFFRYYTPPPTSDEQIIATGWGSDDDYD
FT EIPPKWDESPDEEGSSETTWDQEEKEEEDEYDPNIYMAYLQKEENEWQEIAASLQEEME
FT MEYPRRRPRTETVFSETVDYTPPGDTLMTPVGYPPASSSRSTVTTPSRPPLFEGRVTHV
FT PRFLKRDDYTEWWQLPSSQGTTGALFVMPKQMGLFHEVFSRWESITKNYVAAQGFTDPT
FT EKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQIKRVFSLEDPA
FT SGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFLGTELSEKLWMKMPPE
FT LGNRMKEAFQKEYSGNEVGVFPRILFAYRYLEQECKDAAFKRSLKSLSFCKDMPLTGYY
FT DKTPKYGMRKSKTYKGKPHASHARIEKRKHLIRNKKCKCYLCGDEGHFARECPNNKRDV
FT KRVAIFEGINLPEGFDIVSVEEGEDDSDAIYSISENENGEELDAEVVQEKVFMMREEDQ
FT SYWLGKTNHWTAMVRVSSQQYHCLHQWEHNKEITVVAHINCHFCKQPTQLRSRIHCSTC
FT KLTSCFMCAPIYCNITVQQQPKPPTPFNTNTLLQQQAAYIQWLEGENQRLTEAVEFYKK
FT EAADLRLEKELEKDRKDLEPKIQDRGKKVQILDPEAGPSDDEQTAYLEEDTVSRIIGHT
FT VEEQQEVKKPVKRGNMLYNLDVVLLIPEVGRPIKVKAILDTGATTCCININSVPKTAIE
FT QNTFLVQFRGINSTQSVDKKLKYGRMTISNHQFRIPYCYAFPLSLGDGIEMILGCNFIR
FT GMYGGLRIEGHTITFYKNVTTIQTRLAAVMVGGTTTSELGEEGTEPIFEIEEETEEFDS
FT EVHQQIMSHVAAQAQQQKLDPKLQQLMERLKDQGFIGENPMQHWAKNKILCRLDIKNPD
FT LIIEDKPIKHLTPAMEKQFQKHVKALLDIGVIRPSKSKHRTTAFIVESGTVIDPVTKKT
FT IHGKERMVFNYKRLNDNTEKDQYSLPGIQTILKRVGNKKIFSKFDLKSGFHQVAMAKES
FT IPWTAFWVPQGLYEWLVMPFGLKNAPAVFQRKMDQCFKGTEEFIAVYIDDILVFSETMA
FT EHTKHIGIMLTICQENGLVLSPNKICLAQREIEFLGTIISQGQMKLQPHIIKKIVNKAD
FT MELETTKGLRSFLGLLNYARIYIPNLGKKLSPLYAKTSPTGEKKFNRQDWHLIKEIKNM
FT VQKLPNLAIPPARCCIIIESDGCMEGWGAVCKWKLAKEDSRTTEKICAYASGKFGIIKS
FT TIDAEIFALIKALESFKIFYLDKKHLVARTDCQAIVTFYNKTSTHKPSRIRWITFSDYI
FT TGLGVQVTIEHINGKENQLADTLSRLVYTTWNQSQAHLSEEEEPEKSPHLSLAVLAIPI
FT AWPMTAFYSRRRTPLLKGGSPWQQNKPSQHSCIASKSKQPEKHSWPYETYRTYCTPSET
FT T"
FT CDS 2310. .2582
FT /db_xref="UniProt/TrEMBL:Q5TJI4"
FT /note="ORFX"
FT /product="hypothetical protein"
FT /protein_id="CAE81280.1"
FT /translation="MMIMMKSLQNGMKVLMKKDQVRQLGIRKKKKKKTNMIPTSIWPIY
FT KRKKMSGKKSPPVYKKKWKWNIHGGGHGRRQYSLKQLTIHHLVTH"
FT CDS 4212. .4499
FT /db_xref="GOA:Q5TJI3"
FT /db_xref="InterPro:IPR000169"
FT /db_xref="InterPro:IPR001356"
FT /db_xref="UniProt/TrEMBL:Q5TJI3"
FT /note="ORF4"
FT /product="hypothetical protein"
FT /protein_id="CAE81281.1"
FT /translation="MMNKQRILRKIPLAELSAILWKSNKRSKNQSKGGTCYTTSTWFYL
FT SLKLEDLSRLKLSLIQAQLPVASTSTLFPRQQLNRTLFWFNSEALIPRNQ"
FT CDS 6307. .6702
FT /db_xref="UniProt/TrEMBL:Q5TJI2"
FT /note="ORFY"
FT /product="hypothetical protein"
FT /protein_id="CAE81282.1"
FT /translation="MEPVPSSPVGGRRAGEISTSQLSGVSYPYSLAYDGLLQQKKNAIT
FT QGRLTLATEQAISAQLYRIEEQAARKALMALRDLQDVLHSKRDYLTATATRDNWASDRL
FT PAAQQDSAALDQHADVINAIIERAVQP"
XX
SQ Sequence 7141 BP; 2414 A; 1542 C; 1598 G; 1587 T; 0 other;
AJ609019 Length: 7141 April 19, 2005 08:52 Type: N Check: 5349 ..
1 tggtatcaaa gcttggtttt agcaatggtc atgtccggct aagttagtca
51 gtctaggttc agggaaagag tgaggtaacc gttaggcgtc aaaatactgt
101 tccaaaatac tattcaccaa atcactaggg gtatcctgtt tatgtgaaaa
151 agacgtaacc cagacgaaaa gtacccacga agggggaaaa cttggggaaa
201 aggtgatcag taaacagaaa acaaactatt cctcgtatgc tctacggttg
251 cagccacggc tgatcctccg tatcagaaaa ggaaaagttt ggtgtatgtc
301 tagccgatgg gaagatagta tccaggaatg gtatgagaag tctcacactg
351 ccaaccttga gtaccttgac ctggcctcta ccagtaaagt gaccaacaac
401 caactagctc ataacctcgc agtaaccttt gatagagtca acttaggaaa
451 ccgagtcttc attaaaaacc ttaaacaaat tcaagagtct atcctagaac
501 taaataccag aattgacact gtagaagtag ccttgagaag gctaaccaag
551 cagttccgag aaaacaaacc actgtctgaa tctgaagtaa agaaactagt
601 ggaagagata gcccagcaac ccaaaattgt tgagaaacag gcactggaaa
651 tttctcaaca gttagaactc aaactagaaa aagtggaaaa gcttctacac
701 aagcttgacc agtgggttgg tcaatgagtg aaagcccctc ttaccaagaa
751 gcacttaagg aagctgaaaa gatcgaccct ccagcgattg gactaaccac
801 atccagtgga gtaactgcgg tccaaggctt caggactgtc atcaaacaaa
851 acaacgtcca gatttgccta cttgcgacta tagcagacaa acttgaagaa
901 ctggtgcaag atcagaagaa agcaagaaaa gacaaggcca aggagattgc
951 tattcctgag gatcttatca caaaactcca aggattatcc atccgggaga
1001 aaggtgaagc aaaggtcaca agaaaaccag agccaaaagg aacactgttt
1051 ggattcaaag atccttacaa aattttggca gcagaaaagg ctaagatcac
1101 accaaagcct gtaaaagaaa agaaagatga gtcgagcaag accgcaacct
1151 ccagttccta gtgtgacatc taccactagt gaacagaaca gagaagggcc
1201 tctttatgag gatcaaatca gagattacag aaggagtcag aggaggatct
1251 tcaacctaag aaggagagcc agaaggttga gaagatcaat gatggggtct
1301 agataccagg agaccctaga acaagaaatt gatccacaga caacactgag
1351 gttgtccatg caagaaagag cgcgattagt accagctgaa gtactgtaca
1401 gatcacgacg agacactgtt caccacaggg tctacaccca tcgctctgaa
1451 gaatccgtcc tatgtgttgg cggaaatcaa gttgacaggg ccttcattca
1501 gcccgaaagt ttagagcaac ttcagaggac tggaatgtcc ttcattcaca
1551 taggaatcct gcaagttagg attcaaatcc tgcatcgtca agaagaaggt
1601 accatggctt tagttgtctt ccgtgacaac agatggtctg gggaccagtc
1651 tatcttcgca caaatggaga tagatctaac taaaggcagc cagttggtat
1701 ttgtcatacc agataccatg atgacgatcg gagattttgc ccggaacgta
1751 caactatcaa tcctcacacg aggatatgag aattggcaaa atggagaagc
1801 caacctttta atcacacgtg gcatgacggg acgactatcc aacacaccta
1851 atgtcgcctt tgcctaccaa attgccagcg cgacagatta tctggcaagc
1901 cacggagtaa aagccatcgc agggaaaaag atgaacttac aacacctgcg
1951 aaatcaacag tggattctac gaccaccgca agctgacatc acaccgatgc
2001 aaccaagatc ggtagaaacc aggaacctgg tagatggcag catttccatc
2051 agattccatg attatgaggc agccacctca acatcaagac cccattacaa
2101 cgaagaagat gaagaagtgg agtctgaaac agaatctgaa ataagagaac
2151 acactgtagc agtctggatt ggggaagaag aagttccaga ccaaacagga
2201 agaaagaaag tatgggaaga atctagtaat ggaaatggaa ggttcttccg
2251 gtactacact cctccaccaa catctgatga acaaatcata gccactggtt
2301 ggggaagtga tgatgattat gatgaaatcc ctccaaaatg ggatgaaagt
2351 cctgatgaag aaggatcaag tgagacaact tgggatcagg aagaaaaaga
2401 agaagaagac gaatatgatc ccaacatcta tatggcctat ttacaaaagg
2451 aagaaaatga gtggcaagaa atcgccgcca gtttacaaga agaaatggaa
2501 atggaatatc cacggcggag gccacggacg gagacagtat tctctgaaac
2551 agttgactat acaccacctg gtgacacact gatgacacct gtcggatatc
2601 caccggcctc gtcatcaaga tcaacagtca caacaccaag taggccccct
2651 ttatttgaag gaagggttac acacgtgcca agattcttaa aacgggatga
2701 ctacacagaa tggtggcaac taccatcatc ccaaggcaca actggggcac
2751 tatttgtgat gcccaaacaa atgggcctat ttcatgaggt cttctccaga
2801 tgggagtcca tcaccaaaaa ctatgttgcg gcccaaggtt tcacggaccc
2851 aacagaaaag atggagttca tggaaaattt acttggagaa acagaaaaac
2901 taacctggat ccaatggaga atgaattatg aggctgagta ccagcagctg
2951 ttaacccaag ctgatggacg gcaagggacc cagaatatct tgtcccaaat
3001 taagagagtc ttctctctag aagaccccgc ctcaggatct acgaggatac
3051 aagatgctgc atacagagac cttgaaagat taacctgcca caacataaaa
3101 gatatcgttc agttcctgaa tgattatggg cggttagcag caaaaagtgg
3151 gcgactgttt ctaggaacag agctcagtga aaaattatgg atgaagatgc
3201 caccagaact agggaatcgc atgaaggaag catttcaaaa ggaatactca
3251 ggcaatgaag taggagtctt cccgcgtatc ttgttcgcgt acagatactt
3301 agaacaagaa tgcaaagatg cagcttttaa gcgcagcctg aaatcgttga
3351 gtttctgtaa ggacatgccg ttgacaggtt actatgataa aacacccaaa
3401 tacggcatga ggaagtcaaa aacttacaaa ggaaagccac acgcatcaca
3451 tgcaagaata gaaaagagaa agcacttaat caggaataaa aagtgcaagt
3501 gctatctgtg tggagatgaa ggacattttg ccagagaatg ccctaataac
3551 aaaagagatg tcaagagagt agccattttt gaaggcatca atcttcctga
3601 gggtttcgac attgtctcag tagaagaagg ggaagatgac tcagatgcta
3651 tttatagcat atctgagaat gaaaatgggg aagaacttga cgcagaagta
3701 gtccaagaga aggtcttcat gatgcgagaa gaggaccaat cctactggct
3751 aggaaaaaca aatcactgga cagcaatggt acgagtcagc agccaacagt
3801 atcattgctt gcaccaatgg gagcacaaca aggagatcac ggtggtggcc
3851 cacatcaact gccacttctg taagcagcct actcaactga ggagtcgaat
3901 acactgttcc acgtgtaaac tcaccagctg cttcatgtgt gcccctatct
3951 actgcaatat aacggtccaa cagcagccta aaccgcctac gccattcaac
4001 accaacacct tgctccaaca acaagcggcg tatatccaat ggttagaagg
4051 agaaaaccag cggttaacag aggcagttga attttataaa aaggaagctg
4101 cagatctaag gctcgaaaaa gaattggaaa aagatagaaa agatttagag
4151 ccaaagatac aagacagggg gaagaaggtt caaattcttg atccagaagc
4201 aggaccctct gatgatgaac aaacagcgta tcttgaggaa gataccgtta
4251 gccgaattat cggccatact gtggaagagc aacaagaggt caaaaaacca
4301 gtcaaaaggg ggaacatgtt atacaacctc gacgtggttt tacttatccc
4351 tgaagttgga agacctatca aggttaaagc tatccttgat acaggcgcaa
4401 ctacctgttg catcaacatc aactctgttc ccaagacagc aattgaacag
4451 aacacttttt tggttcaatt cagaggcatt aattccacgc aatcagtaga
4501 taaaaagcta aaatacgggc ggatgactat tagcaaccac cagttccgga
4551 tcccgtactg ttatgccttt cctctatctc ttggagacgg aatagaaatg
4601 atcctcgggt gtaacttcat ccgtgggatg tatggcggtt tgaggattga
4651 aggtcacaca atcaccttct acaaaaacgt caccactatt caaacccgcc
4701 ttgctgctgt aatggttggt ggtacaacca cttctgagtt gggggaggaa
4751 ggtactgaac ccatttttga aattgaagaa gaaacagaag agtttgactc
4801 agaagtccat caacaaatta tgagtcatgt tgcagcccaa gcccaacaac
4851 aaaaattaga cccaaaactc caacaactaa tggaacggtt aaaggatcag
4901 ggctttattg gggaaaatcc gatgcaacat tgggctaaaa acaagatcct
4951 gtgtagattg gatatcaaga atccagacct tatcatagaa gacaagccca
5001 ttaaacactt aacaccggct atggagaagc agttccagaa gcatgtcaaa
5051 gctctcctgg acattggtgt tatcaggcct agtaagtcaa aacacaggac
5101 tacggccttc atagtagaat caggcactgt tattgatcca gtaacaaaga
5151 agaccataca cggcaaagaa agaatggtct ttaactacaa acgcctgaat
5201 gacaatacgg agaaggatca atactcgcta cctggtatac agaccatcct
5251 gaagcgagta ggcaacaaaa agattttcag caagttcgat ttaaaatcgg
5301 gcttccatca ggttgccatg gcaaaagagt ccatcccttg gactgctttt
5351 tgggtaccgc agggcctata cgagtggtta gttatgccct ttgggctcaa
5401 aaacgctcct gcagtatttc aaagaaaaat ggaccaatgt ttcaaaggca
5451 cagaagaatt catagctgtg tatattgatg acatcttggt cttcagcgag
5501 actatggcgg aacacaccaa gcatattgga atcatgctaa caatctgcca
5551 agaaaatggg ctggtcctaa gcccaaataa aatatgtctt gctcaacgag
5601 agattgaatt tttgggcaca atcatctctc aaggtcaaat gaagcttcag
5651 cctcatatca taaagaagat agtcaacaag gcagatatgg agctcgaaac
5701 aactaaaggc ctaagatcat ttttgggcct cctgaactat gcccgaatct
5751 acatacccaa tctggggaag aagctaagtc cactatatgc caaaaccagt
5801 cccaccggag aaaagaagtt taatcgacag gattggcatt tgataaagga
5851 gattaaaaat atggtccaaa agctcccaaa cctcgctatc ccaccagcaa
5901 gatgctgtat tatcatagaa agcgatggtt gcatggaagg atggggggcc
5951 gtatgcaagt ggaaattagc aaaagaagat tcccgcacta ctgaaaagat
6001 atgtgcctac gctagtggaa aattcggcat aatcaagtcc acaattgacg
6051 ccgagatttt cgcactcata aaagcattag aatcttttaa aatcttctat
6101 ctggacaaaa aacatttggt ggcgcgtact gactgtcagg cgatagtgac
6151 gttttataac aagacaagca ctcacaagcc ttctcgtata cgttggatca
6201 ccttttccga ctatataacg gggttaggag ttcaagttac tatcgaacac
6251 ataaacggaa aggagaacca gttagcagat acactaagca gactagtgta
6301 caccacatgg aaccagtccc aagctcacct gtcggaggaa gaagagccgg
6351 agaaatctcc acatctcagc ttagcggtgt tagctatccc tatagcttgg
6401 cctatgacgg ccttctacag cagaagaaga acgccattac tcaagggagg
6451 ctcaccttgg caacagaaca agccatctca gcacagctgt atcgcatcga
6501 agagcaagca gccagaaaag cactcatggc cctacgagac ctacaggacg
6551 tactgcactc caagcgagac tacttgactg cgactgccac acgtgacaac
6601 tgggccagtg atagactgcc agctgcccaa caagattcag ccgccctcga
6651 ccaacatgct gacgtgatta acgccattat cgaaagggct gtccaaccct
6701 agtttggacg atagtgtgta ataattaagt gtgctttact ttccagctgt
6751 ccaaccctag tttggacgat agtgtgtaat aattaagtgt gctttacttt
6801 ccagctgtcc aactctagtt tggacgatag tgtgtaataa ttaagtatgc
6851 tttactttcc agctgtaact cattatagag tagacatagt gattgacgat
6901 ggggcccgaa gagcacccgg attactactc taccatctat aaatgggagt
6951 gtgtaaggct tagccatcaa ggaggaagag atatccatcc tgattctaag
7001 cattctagag cttgtaagtt tttaagagaa ataaagaatc ttcttagtga
7051 ttatttcttt gtttcccctg ggaaaatttt aaacagtttc tgttattctg
7101 tttaatcctg ttccacgttt catttcctct gcaagcctac t