Sequence of DPV Tobacco vein distorting virus

Tobacco vein-distorting virus RdRp gene (partial), CP gene and MP gene, genomic RNA, isolate BSh4

ACC No: AJ704819

Dated: 2006-03-01 | Length: 1655 | CRC: -2088040342

                
ID   AJ704819   standard; genomic RNA; VRL; 1655 BP.
XX
AC   AJ704819;
XX
SV   AJ704819.1
XX
DT   13-DEC-2004 (Rel. 82, Created)
DT   01-MAR-2006 (Rel. 87, Last updated, Version 3)
XX
DE   Tobacco vein-distorting virus RdRp gene (partial), CP gene and MP gene,
DE   genomic RNA, isolate BSh4
XX
KW   coat protein; CP gene; movement protein; MP gene; RdRp gene;
KW   RNA-directed RNA polymerase.
XX
OS   Tobacco vein distorting virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   unclassified Luteoviridae.
XX
RN   [1]
RP   1-1655
RA   Li F.;
RT   ;
RL   Submitted (12-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Li F., Department of Phytopathology, Yunnan Agricultural University, Key
RL   Laboratory for Plant Pathology of Yunnan Province, Kunming, 650201, Yunnan
RL   Province, CHINA.
XX
RN   [2]
RA   Li F., Lan P.X.;
RT   "Analysis of Partial Genome Structure of Tobacco Vein Distorting Virus and
RT   It's Classification";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1655
FT                   /organism="Tobacco vein distorting virus"
FT                   /isolate="BSh4"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Baoshan, Yunnan"
FT                   /virion
FT                   /db_xref="taxon:192203"
FT   CDS             <1. .830
FT                   /codon_start=3
FT                   /gene="RdRp"
FT                   /product="RNA-directed RNA polymerase"
FT                   /EC_number="2.7.7.48"
FT                   /db_xref="GOA:Q5NJA7"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="InterPro:IPR007095"
FT                   /db_xref="UniProtKB/TrEMBL:Q5NJA7"
FT                   /protein_id="CAG28952.1"
FT                   /translation="RYRLIMSVSLVDQLVARVLFQNQNRREIALWRANPSKPGFGLSTD
FT                   EQVLEFVQALAAQVEVPPEEVITSWEKYLVPTDCSGFDWSVAEWMLHDDMVVRNRLTLD
FT                   LNPTTEKLRFTWLKCISNSVLCLSDGTLLAQRVPGVQKSGSYNTSSSNSRVRVMAAYHC
FT                   GADWAMAMGDDALESVSTNLEVYKSLGFKVEVSGQLEFCSHIFRAPDLALPVNERKMLY
FT                   KLIFGYNPGSGSLEVISNYIAACASVLNELRHDPDSVALLTSWLVHPVLPQND"
FT   CDS             1032. .1649
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q5NJA6"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:Q5NJA6"
FT                   /protein_id="CAG28953.1"
FT                   /translation="MNTGGVRSNNGNGGSRVSRPRRRARSVRPVVVVAPPRGARRRTRR
FT                   RRNGGRNRRGRNGVGGRSSNSETFIFNKDSIKDSSSGSITFGPSLSESVALSGGVLKAY
FT                   HEYKITMVNIRFISESSSTAEGSIAYELDPHCKLSSLQSTLRKFPVTKGGQATFRAAQI
FT                   NGVEWHDTTEDQFRLLYKGNGTKGVAAGFFQIRYTVQLHNPK"
FT   CDS             1060. .1530
FT                   /gene="MP"
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:Q5NJA5"
FT                   /protein_id="CAG28954.1"
FT                   /translation="MEMVDHESLALADAHDRFGRSLWSHPLGEHGEELEEDEMEAGTEE
FT                   AVMELEEGQATARLSSSTRTQSRIVPQAQSLSGRLYQRASRFQVEFSKPTMNIRSQWST
FT                   YASSVNPLPQRRAPSLTSWTPTASFLVSNQPCVNSPSPKAGKQRSGLRKLMG"
XX
SQ   Sequence 1655 BP; 435 A; 414 C; 421 G; 385 T; 0 other;

aj704819 Length: 1655  01-MAR-2006  Type: N  Check: 2017  ..

       1  gacgctaccg cctcatcatg agtgtctctc tagtagatca attggtggcc
      51  cgggttctgt tccaaaatca gaacaggcga gaaatcgctc tttggagggc
     101  aaatccctca aaacccggtt ttggcttgtc tacagatgag caagtgctgg
     151  agttcgtaca agctctggcc gcgcaagtgg aagtcccacc tgaggaagtg
     201  attacctcct gggagaagta ccttgtgccg actgactgct ctggtttcga
     251  ctggagcgtt gcggaatgga tgctacacga cgatatggtc gtccgcaaca
     301  gactcacatt ggacctgaat ccgacaacgg aaaagctgcg ctttacgtgg
     351  ctaaaatgca taagtaacag tgtcctttgt ttgagcgatg gcaccctgct
     401  agcccaaaga gtccccggtg ttcagaaatc tgggagttac aacacaagta
     451  gctctaactc cagagtccgg gttatggccg cttatcattg cggagccgac
     501  tgggccatgg ccatggggga tgacgctctc gagtcagtca gcaccaacct
     551  agaggtgtat aaaagtctag gtttcaaagt cgaggtttca ggacaactgg
     601  aattctgctc tcatattttt agagcgcctg acctcgccct cccagtaaat
     651  gagcgtaaaa tgctgtataa gctcatcttc ggttacaatc ctgggagcgg
     701  gagtctggag gtgatctcca actatattgc cgcctgtgca tccgtgttaa
     751  acgagttgcg gcatgaccca gactcagtag ctcttctcac ctcgtggctg
     801  gtccatccag tgctgccaca aaacgattaa aggagagagc atacataact
     851  agccaagcat acatcagttg caagcgttgg aagttcaagt ctgattacca
     901  aagcccgaca ccatagattt taaattttta gcaggatttg cgtcaggatt
     951  tctatccgca atcccaattt cagttgcggg catttacttt agtctacctt
    1001  aaaatctcag cccacgttag agctattgtt aatgaatacg ggaggagtca
    1051  ggagtaataa tggaaatggt ggatcacgag tctctcgccc tcgcagacgc
    1101  gcacgatcgg ttcggccggt cgttgtggtc gcaccccctc ggggagcacg
    1151  gcgaagaact cgaagaagac gaaatggagg caggaacaga agaggccgta
    1201  atggagttgg aggaaggtca agcaacagcg agactttcat cttcaacaag
    1251  gactcaatca aggatagttc ctcaggctca atcactttcg ggccgtctct
    1301  atcagagagc gtcgcgcttt caggtggagt tctcaaagcc taccatgaat
    1351  ataagatcac aatggtcaac atacgcttca tcagtgaatc ctcttccaca
    1401  gcggagggct ccatcgctta cgagctggac ccccactgca agctttctag
    1451  tctccaatca accctgcgta aattccccgt caccaaaggc gggcaagcaa
    1501  cgttcagggc tgcgcaaatt aatggggtag agtggcatga tacaaccgag
    1551  gatcaattta ggctgctcta taaaggcaac ggaacaaaag gtgttgccgc
    1601  cgggttcttt caaatccggt acaccgtgca actgcacaac cccaaatagg
    1651  tagac