Sequence of DPV East African cassava mosaic Zanzibar virus
East African cassava mosaic Zanzibar virus segment DNA B, complete sequence, isolate EACMZV-[K19]
ACC No: AJ704942
Dated: 2006-09-14 | Length: 2747 | CRC: 1389114629
ID AJ704942; SV 1; circular; genomic DNA; STD; VRL; 2747 BP.
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AC AJ704942;
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DT 12-MAY-2006 (Rel. 87, Created)
DT 14-SEP-2006 (Rel. 89, Last updated, Version 3)
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DE East African cassava mosaic Zanzibar virus segment DNA B, complete
DE sequence, isolate EACMZV-[K19]
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KW BC1; BV1; complete genomic segment; MP gene; NSP gene.
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OS East African cassava mosaic Zanzibar virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2747
RA Bull S.E.;
RT ;
RL Submitted (13-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL Bull S.E., Disease & Stress Biology, John Innes Centre, Colney Lane,
RL Norwich, Norfolk, NR4 7UH, UNITED KINGDOM.
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RN [2]
RA Bull S.E.;
RT "Diversity of cassava-infecting geminiviruses in Kenya";
RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK.
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RN [3]
RA Bull S.E., Briddon R.W., Sserubombwe W.S. ., Ngugi K., Markham P.G.,
RA Stanley J.;
RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya";
RL J. Gen. Virol. 87:3053-3065(2006).
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RN [4]
RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G. .,
RA Stanley J.;
RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya";
RL J. Gen. Virol. 87(Pt 10):3053-3065(2006).
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FH Key Location/Qualifiers
FH
FT source 1. .2747
FT /organism="East African cassava mosaic Zanzibar virus"
FT /segment="DNA B"
FT /specific_host="Manihot esculenta"
FT /isolate="EACMZV-[K19]"
FT /mol_type="genomic DNA"
FT /country="Kenya:Malindi, Fulunzi"
FT /clone="K19FB-3[2001]"
FT /virion
FT /db_xref="taxon:223275"
FT CDS 336. .1136
FT /gene="NSP"
FT /product="BV1"
FT /function="nuclear shuttle protein"
FT /db_xref="UniProtKB/TrEMBL:Q1JU34"
FT /protein_id="CAG29049.1"
FT /translation="MSLVRQCKMYSVYRRGYKTPYRSPYGSRVTPYVNRKTAVKQTSKS
FT RVSRKLAYESPKGLYTRRSLEDIHNGASLKLPQQGDYTSYVTLPCRGIDGNGGRSVDHI
FT KLLSLRVSGTVNISQSGGDDNMGERTTMRGIFFMVCLVDKKPFVPEGVSILPTFNELFG
FT EYESVYGMPRLKENIRHRYRVIGTSKLYITTDEDHIQKPFSLRRRLSGGKYPIWSSFKD
FT VDNSSTGGNYKNINKNAILVSYVWVSLCRTTCDVYSQFVLNYVG"
FT CDS complement(1268. .2344)
FT /gene="MP"
FT /product="BC1"
FT /function="movement protein"
FT /db_xref="UniProtKB/TrEMBL:Q1JU33"
FT /protein_id="CAG29050.1"
FT /translation="MNSNPLRGQFNIYGPCSDLVYSCIYRMHICLHVYIVLTSLRLLTL
FT VFFIHSMDNQFTVTDNNYINSKRTEYALTNDAAPINLQFPSSFEQATMRLKGRCMKIDH
FT IIIEYRNQVPFNATGSVIVEIRDNRVSLEDAAQAAFTFPIACNVDLHYFSSTYFSISEP
FT SPWKILYRVEDSNVIEGVNFASIKAKLRLSSAKHSTDIRFKPPTINILSKGYTKDCIDF
FT WSVEKGETRRRLLNPTPTAHSQRPITHRPITILPGETWATKSQIGLPSSSGPARLEHFR
FT SQSMRMDPSTTPTDLDNESTEYPYQRLHRLNTPELDPGDSVSQTQSDSVSRKALETLLE
FT STINKCLIKIKSEAPRPL"
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SQ Sequence 2747 BP; 769 A; 450 C; 712 G; 816 T; 0 other;
aj704942 Length: 2747 14-SEP-2006 Type: N Check: 4739 ..
1 accggatggc cgcgcccgaa aaagcagatg ggccccagaa tggtccccac
51 gcactaagta atgtcagcca atcatgtgca agactgggag actcggtagt
101 tacgaaagga ggatgaagtg gtccctacgc actaagtgtg acaggcaagt
151 ttattgctat gtgtgtatta tatttttata ggtgtgttac gggtccatct
201 aaaggtatgt tatggggcct atcataaaaa agcaaaatat aggttcctat
251 ttacatatgg attataagtt tatgtgcgga tatatgatcc gccacgtgtt
301 tataatggat atggagtgtc ctataaatat ttggcatgtc tctcgttcgt
351 caatgcaaga tgtattctgt atacagacgt gggtataaga cgccgtatag
401 gagtccgtat ggctcgcgtg taacaccata tgtgaatcgt aagaccgctg
451 ttaaacagac gtctaaatct cgtgtatcgc gaaagttggc gtatgaatcg
501 ccaaaaggtc tatatacgcg acgctcattg gaggatatcc ataatggggc
551 ttccttgaag ttgccacaac agggggatta tacgtcctac gtgacactcc
601 catgtcgagg catcgatggt aatgggggta ggtctgttga tcatataaaa
651 ttattaagct tgagggtttc tgggaccgtc aacatcagtc aatccggtgg
701 tgatgacaat atgggagaga gaacgaccat gaggggtatt tttttcatgg
751 tttgtcttgt tgataagaaa ccattcgttc cagagggggt cagcatattg
801 ccgacgttca atgagttgtt cggggaatat gaatccgtgt atggcatgcc
851 taggttgaag gaaaacatcc gtcaccgtta tcgcgttatt gggacgtcga
901 aattatatat aacgaccgat gaagatcaca tccagaagcc gtttagtcta
951 cgtcgaagat taagtggagg gaaatatcct atatggtcgt cgttcaagga
1001 tgtggataat agtagtacag gtggtaatta taaaaatata aataagaacg
1051 ctatactcgt tagttatgtg tgggtttcgc tatgtcggac cacgtgtgat
1101 gtgtattcgc agtttgtact taattacgtc ggctgataat aaaactatat
1151 aattgtttta tggatatgaa tgatgtggga tcgaacgaaa caataaatga
1201 acattaatgg gaagcataaa gagttttatt atgtgccgaa gcaaatattg
1251 tacatataaa tggtttatta caatggcctt ggtgcttcgg atttgatctt
1301 gatgaggcac ttgttgatgg tactctcaag cagtgtctcg agagcctttc
1351 tggatactga gtcggattgg gtctgtgata ccgagtctcc tgggtctaac
1401 tctggtgtgt ttaatctgtg tagtctctgg taaggatatt cggtggactc
1451 gttgtctaag tctgttggtg ttgtcgatgg gtccattctc atggactgtg
1501 aacgaaagtg ttccagcctt gctgggccgg atgagcttgg tagcccaatc
1551 tgagacttcg tggcccatgt ttctccaggt aggatggtga tgggcctgtg
1601 ggttattgga cgttgactat gagcagttgg agtaggattt agtaatctcc
1651 gtcttgtttc tcctttttcc acggaccaga agtctatgca gtcttttgtg
1701 tatcccttgg ataagatgtt aatcgttggg ggtttgaaac gtatgtccgt
1751 ggaatgttta gccgaggata atctgagctt tgccttgatg gatgcgaagt
1801 tcacgccctc tatgacgttt gagtcttcga ctctgtatag gattttccaa
1851 ggggagggtt ctgaaatcga aaaatatgta gaagagaagt agtggaggtc
1901 tacgttgcaa gctatgggga aagtgaatgc tgcctgcgct gcgtcttcaa
1951 ggctgacgcg attatctctg atttctacga taaccgaccc agttgcgtta
2001 aatgggacct ggtttcggta ttcaattata atgtggtcga ttttcataca
2051 tcggcctttg agtcgcatgg tcgcctgctc gaatgagctc ggaaattgga
2101 gattgattgg tgcagcatcg tttgttaatg cgtattctgt gcgtttgctg
2151 tttatgtaat tattgtccgt gacggtgaat tggttgtcca tgctatgaat
2201 gaaaaaaaca agggttagta aacggagaga agtcagcaca atgtagacat
2251 gtaagcatat atgcattcgg tatatacaag aatacactaa atcagaacaa
2301 ggaccatata tgttgaattg gccgcgcagc ggattggaat tcataaaaat
2351 ctactaacaa ataaaaaagt cgaatggtgt tatgtgatgt aaatcactta
2401 cataatcact gatgaagcag tctggagtga attcctggtt caattgggac
2451 acaaaaaaag aaataaaagt taacgaaata aatgtataac gtattgggat
2501 aaaaaggaaa gtgagcatat gttatgcgcc gtgtcgttaa atgatatgct
2551 attgggtgtt tatataggcg ttaataagcg ataggtggta gagagagaaa
2601 gaagagagaa gcgagagcaa ttggagacac cccggttgat gtctctactg
2651 aattggagac aatatatagt gtctccaaat ggcataatgg taattaggta
2701 gatctatttt caaaatgtga accaaaagcg gccatccgta taatatt