Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus-Uganda variant segment DNA A, complete sequence, isolate EACMV-UG[K67]
ACC No: AJ717526
Dated: 2006-09-14 | Length: 2798 | CRC: 1402448285
ID AJ717526; SV 1; circular; genomic DNA; STD; VRL; 2798 BP.
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AC AJ717526;
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DT 09-MAR-2006 (Rel. 87, Created)
DT 14-SEP-2006 (Rel. 89, Last updated, Version 3)
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DE East African cassava mosaic virus-Uganda variant segment DNA A, complete
DE sequence, isolate EACMV-UG[K67]
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KW AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein;
KW AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein.
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OS East African cassava mosaic virus-Uganda variant
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2798
RA Bull S.E.;
RT ;
RL Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre,
RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM.
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RN [2]
RA Bull S.E.;
RT "Diversity of cassava-infecting geminiviruses in Kenya";
RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK.
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RN [3]
RA Bull S.E., Briddon R.W., Sserubombwe W.S. ., Ngugi K., Markham P.G.,
RA Stanley J.;
RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya";
RL J. Gen. Virol. 87:3053-3065(2006).
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RN [4]
RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G. .,
RA Stanley J.;
RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya";
RL J. Gen. Virol. 87(Pt 10):3053-3065(2006).
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FH Key Location/Qualifiers
FH
FT source 1. .2798
FT /organism="East African cassava mosaic virus-Uganda
FT variant"
FT /segment="DNA A"
FT /specific_host="Manihot esculenta"
FT /isolate="EACMV-UG[K67]"
FT /mol_type="genomic DNA"
FT /country="Kenya:Butere, Mumias/Enjinja"
FT /clone="K67FA-1[2002]"
FT /virion
FT /db_xref="taxon:374777"
FT CDS 172. .528
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2 protein"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /protein_id="CAJ77998.1"
FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT ETQDVQNVSKPRCP"
FT CDS 332. .1105
FT /codon_start=1
FT /gene="AV1"
FT /product="AV1 protein"
FT /protein_id="CAJ77999.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR
FT AGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQDFGQIFNMFDNE
FT PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT CDS complement(1102. .1506)
FT /codon_start=1
FT /gene="AC3"
FT /product="AC3 protein"
FT /db_xref="InterPro:IPR000657"
FT /protein_id="CAJ78000.1"
FT /translation="MDSRTGELITAPQARNGVFTWDITNPLYFEITDHDKRPGNMNHDI
FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT
FT VLQAVDHVVYDVLLNTLQVTEQHAIKFNLY"
FT CDS complement(1247. .1654)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2 protein"
FT /db_xref="InterPro:IPR000942"
FT /protein_id="CAJ78001.1"
FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSKEWRFYLGHNKSPLFRNHRPRQEAREHEPRHHHTPDTVQPQ
FT PSEGIGDSQVFSQLQGLDDLTASDWSFLKSI"
FT CDS complement(1563. .2641)
FT /pseudo
FT /codon_start=1
FT /gene="AC1"
FT /note="AC1 protein"
FT CDS complement(2251. .2484)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="CAJ78003.1"
FT /translation="MGCLISMFSSNSKASSNVPTRDSSISFPHPDQHISIRTFRGLNHR
FT PMSKLTLKKEGNFLTLDFSKSMPEVQGERASI"
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SQ Sequence 2798 BP; 729 A; 554 C; 734 G; 781 T; 0 other;
aj717526 Length: 2798 14-SEP-2006 Type: N Check: 951 ..
1 accggatggc cgcgcccgaa aaagcatgtg gaccccacaa tgaccgcgcc
51 cgtgaaagaa agtggtccct gcgcacttgt tttggtcggc cagtcatatt
101 cgcgcgtgaa agtctagata tttgttgttt gtctttatag acttcgtcgc
151 gaagtagtag agcgcgtcaa catgtgggat ccattggtga acgattttcc
201 cgaaaccgtt cacggtttcc gttctatgct tgctgttaaa tacctgttac
251 atctggaaca ggaatacgat cgcggtactg tcggggctga gtatatacgg
301 gatctaatag gggttctacg gtgtaagaat tatgtcgaag cgaccaggag
351 atataataat ctcaacaccc gtatccaagg tgcggaggag gctgaacttc
401 gacagcccat acacgaaccg tgttgttgcc cccactgtcc gcgtcaccag
451 aagcaaaata tgggccaaca ggcccatgta tcggaaaccc aagatgtaca
501 gaatgtatcg aagcccagat gtccctaagg gctgtgaagg cccatgtaag
551 gtccagtcgt ttgagcagag ggatgatgtg aagcaccttg gtatctgtaa
601 ggtgattagt gatgtgacgc gtgggcctgg gctgacacac agggccggaa
651 agaggttttg tatcaagtcc atttacattc ttggtaagat ctggatggat
701 gaaaatatta agaagcagaa tcacactaat aatgtgatgt tttacctgct
751 tagggataga aggccgtatg gcaatgcgcc ccaagacttt gggcagatat
801 ttaacatgtt tgataatgag cccagtactg caacaattaa gaacgatttg
851 agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggtgg
901 tccatctggc atgaaggagc aggcgttggt gaaaaggttt tacaagctga
951 atcatcacgt gacatataat catcaggagg cagggaagta tgagaatcac
1001 acagagaatg cgttgttatt gtatatggca tgtacacatg cctcgaatcc
1051 tgtgtatgct acgctgaaaa tacgcatcta tttttatgat gcagtgacaa
1101 attaataaag gttgaatttt attgcatgtt gctccgtaac ttggagtgtg
1151 tttagtaata catcgtacac aacatgatca acagcttgaa ggacagtgtt
1201 aatggaaata acgcctatca tatctaaata cttgagcact tgatatctaa
1251 atactcttaa gaaacgacca gtctgaggcc gtaaggtcgt ccagaccttg
1301 aagttgagaa aacacttgtg aatccccaat gccttccgaa ggttgtggtt
1351 gaaccgtatc tggagtgtga tgatgtcgtg gttcatgttc cctggcctct
1401 tgtcgtggtc ggtgatttcg aaatagaggg gatttgttat gtcccaggta
1451 aaaacgccat tccttgcttg aggcgcagtg atgagttccc ctgtgcgaga
1501 atccatggtt gatgcagtcg atatggagat agaacgagca gccgcattcg
1551 aggtctaccc gcctacgtct gacggccctg gtcttcgctg tgcggtgttg
1601 gactttgatg ggcactagag aacaatggct cgtggagggt gatgaaggtg
1651 gcattcttta aagcccaggc tttaagggat tggttctttt cctcgtctag
1701 aaactcttta tatgatgatg ttggtcctgg attgcagagg aagatggtgg
1751 gaatgccgcc tttaatttga attggcttcc cgtattttgt attgctttgc
1801 cagtctcttt gggcccccat gaattctttg aagtgtttga ggtagtgggg
1851 gtcgacgtca tcaatgacgt tgtaccaggc gtcgtttgaa tataccttgg
1901 gagacagacc caggtgtcca caaagataat tatggggtcc cagtgaacga
1951 gcccacattg ttttgccggt tcggctatca ccttctagaa caatactgat
2001 cggtctccat ggccgcgcag cgggactgca tatattttcg gatacccata
2051 cctctatgtc ctctgggact tgtgtaaaag aggatgataa gaacggacta
2101 acgtaagttt gtggcggagc ctggaagatt ctatctgcgt aagcagatat
2151 gttatggaac tgtaaaaaaa ggactttgga tctttttctt taataatttg
2201 aagagcctcg gatttagacg aagcattcaa cgcgtcggca tatacctgag
2251 ctaaatgctg gccctctccc cttgcacttc tggcatcgac ttggaaaagt
2301 ccagcgtcaa gaaattcccc tcctttttca atgtaagctt tgacatcgga
2351 cgatgattta gccccctgaa tgttcggatg gaaatgtgtt gatcgggatg
2401 gggaaatgag atcgaagaat ctcgggttgg tacattggaa cttgccttcg
2451 aattggatga gaacatggag atgaggcacc ccatcctgat gtagttctct
2501 gcaaacccta atgaatttga tattcgtcgg gtacgaaagg gcttgtaatt
2551 gggaaagggc ctcttctttt gttaatgagc atcggggata ggttatgaaa
2601 taatttctgg catttatttg aaaacgaccg gctcttggca tattggctgt
2651 cgttttggat cgggggacac tcaaaactcc aggggaacgg tggaatgggg
2701 ggcaatatat atgatgtccc ccaatggcat atgtgtaaat aggtagactt
2751 ccattcaaaa tttgaattcc gaatattggc ggccatccga ttaatatt