Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus-Uganda variant segment DNA A, complete sequence, isolate EACMV-UG[K79]
ACC No: AJ717529
Dated: 2006-09-14 | Length: 2799 | CRC: 1426527598
ID AJ717529; SV 1; circular; genomic DNA; STD; VRL; 2799 BP.
XX
AC AJ717529;
XX
DT 09-MAR-2006 (Rel. 87, Created)
DT 14-SEP-2006 (Rel. 89, Last updated, Version 3)
XX
DE East African cassava mosaic virus-Uganda variant segment DNA A, complete
DE sequence, isolate EACMV-UG[K79]
XX
KW AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein;
KW AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein.
XX
OS East African cassava mosaic virus-Uganda variant
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2799
RA Bull S.E.;
RT ;
RL Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre,
RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM.
XX
RN [2]
RA Bull S.E.;
RT "Diversity of cassava-infecting geminiviruses in Kenya";
RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK.
XX
RN [3]
RA Bull S.E., Briddon R.W., Sserubombwe W.S. ., Ngugi K., Markham P.G.,
RA Stanley J.;
RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya";
RL J. Gen. Virol. 87:3053-3065(2006).
XX
RN [4]
RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G. .,
RA Stanley J.;
RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya";
RL J. Gen. Virol. 87(Pt 10):3053-3065(2006).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2799
FT /organism="East African cassava mosaic virus-Uganda
FT variant"
FT /segment="DNA A"
FT /specific_host="Manihot esculenta"
FT /isolate="EACMV-UG[K79]"
FT /mol_type="genomic DNA"
FT /country="Kenya:Bungoma, Nangeni"
FT /clone="K79FA-2[2002]"
FT /virion
FT /db_xref="taxon:374777"
FT CDS 173. .529
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2 protein"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /protein_id="CAJ78016.1"
FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT ETQDVQNVSKPRCP"
FT CDS 333. .1106
FT /codon_start=1
FT /gene="AV1"
FT /product="AV1 protein"
FT /protein_id="CAJ78017.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR
FT VGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQDFGQIFNMFDNK
FT PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT CDS complement(1103. .1507)
FT /codon_start=1
FT /gene="AC3"
FT /product="AC3 protein"
FT /protein_id="CAJ78018.1"
FT /translation="MDSRTGELITAPQARNGVFTWDITNPLYFEITDHDRRPGNMNHDI
FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT
FT VLQAVDHVVYDVLLNTLQVTEQYAIKFNLY"
FT CDS complement(1248. .1655)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2 protein"
FT /db_xref="InterPro:IPR000942"
FT /protein_id="CAJ78019.1"
FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSKEWRFYLGHNKSPLFRNHRPRQEAREHEPRHHHTPDTVQPQ
FT PSEGIGDSQVFSQLQGLDDLTASDWSFLKSI"
FT CDS complement(1659. .2642)
FT /codon_start=1
FT /gene="AC1"
FT /product="AC1 protein"
FT /protein_id="CAJ78020.1"
FT /translation="MPRAGRFQINAKNYFITYSRCSLTKEEALSQLQALSYPTNIKFIR
FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI
FT EKGGEFLDAGLFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH
FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEDIEVWVSENICSPAARPWRPISIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVLMTSTPTTSNTSKNSWGPKETG
FT KAIQNTGSPFKLKAAFPLSSSAIQDQHHHIKSFWTRERTNPLKPGL"
FT CDS complement(2252. .2485)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="CAJ78021.1"
FT /translation="MGCLISMFSSNSKASSNVPTRDSSISFPHPDQHISIRTFRELNHR
FT PMSKLTLKREGNFLTLDFSKSMPEVQEERASI"
XX
SQ Sequence 2799 BP; 733 A; 553 C; 729 G; 784 T; 0 other;
aj717529 Length: 2799 14-SEP-2006 Type: N Check: 820 ..
1 accggatggc cgcgcccgaa aaaagcagat ggaccccaca atgaccgcgc
51 ccgttaaaga aagtggtccc tgcgcacttg ttttggtcgg ccagtcatat
101 tcgcgcgtga aagtctagat atttgttgtt tgtctttata gacttcgtcg
151 cgaagtagta gagcgcgtca acatgtggga tccattggtg aacgattttc
201 ccgaaaccgt tcacggtttc cgttctatgc ttgccgttaa atacctgtta
251 catctggaac aggaatacga tcgcggtact gtcggggcgg agtatatacg
301 ggatctaata ggggttctac ggtgtaagaa ttatgtcgaa gcgaccagga
351 gatataataa tctcaacacc cgtatccaag gtgcggagga ggctgaactt
401 cgacagccca tacacgaacc gtgttgttgc ccccactgtc cgcgtcacca
451 gaagcaaaat atgggccaac aggcccatgt atcggaaacc caagatgtac
501 agaatgtatc gaagcccaga tgtccctaag ggctgtgaag gcccatgtaa
551 ggtccagtcg tttgagcaga gggatgatgt gaagcacctt ggtatctgta
601 aggtgattag tgatgtgacg cgtgggcctg ggctgacaca cagggtcgga
651 aagaggtttt gtatcaagtc catttacatt cttggtaaga tctggatgga
701 tgaaaatatt aagaagcaga atcacactaa taatgtgatg ttttacctgc
751 ttagggatag aaggccgtat ggcaatgcgc cccaagactt tgggcagata
801 tttaacatgt ttgataataa gcccagtact gcaacaatta agaacgattt
851 gagggatagg tttcaggtgt tgaggaaatt tcatgccact gttgttggtg
901 gtccatctgg catgaaggag caggcgttgg tgaaaaggtt ttacaagctg
951 aatcatcacg tgacatataa tcatcaggag gcagggaagt atgagaatca
1001 cacagagaat gcgttgttat tgtatatggc atgtacacat gcctcgaatc
1051 ctgtgtatgc tacgctgaaa atacgcatct atttttatga tgcagtgact
1101 aattaataaa ggttgaattt tattgcatat tgctccgtaa cttggagtgt
1151 gtttagtaat acatcgtaca caacatgatc aacagcttga aggacagtgt
1201 taatggaaat aacgcctatc atatctaaat acttgagcac ttgatatcta
1251 aatactctta agaaacgacc agtctgaggc cgtaaggtcg tccagacctt
1301 gaagttgaga aaacacttgt gaatccccaa tgccttccga aggttgtggt
1351 tgaaccgtat ctggagtgtg atgatgtcgt ggttcatgtt ccctggcctc
1401 ctgtcgtggt cggtgatttc gaaatagagg ggatttgtta tgtcccaggt
1451 aaaaacgcca ttccttgctt gaggcgcagt gatgagttcc cctgtgcgag
1501 aatccatggt tgatgcagtc gatatggaga tagaacgagc agccgcattc
1551 gaggtctacc cgcctacgtc tgacggccct ggtcttcgct gtgcggtgtt
1601 ggactttgat gggcactaga gaacaatggc tcgtggaggg tgatgaaggt
1651 ggcattcttt aaagcccagg ctttaaggga ttggttcttt ccctcgtcca
1701 gaaactcttt atatgatgat gttggtcctg gattgcagag gaagatagtg
1751 ggaatgccgc ctttaatttg aatgggcttc ccgtattttg tattgctttg
1801 ccagtctctt tgggccccca tgaattcttt gaagtgtttg aggtagtggg
1851 ggtcgacgtc atcaatacgt tgtaccaggc gtcgtttgaa tataccttgg
1901 gagacagatc caggtgtcca caaagataat tatggggtcc cagtgaacga
1951 gcccacattg ttttgccggt tcggctatca ccttctagaa caatactgat
2001 cggtctccat ggccgcgcag cgggactgca tatattttcg gatacccata
2051 cctctatgtc ctctgggact tgtgtaaaag aggatgataa gaacggacta
2101 acgtaagttt gtggcggagc ctggaagatt ctatctgcgt tagcagatat
2151 gttatggaac tgtaaaaaaa atgactttgg atctttttct ttaataattt
2201 gaagagcctc ggatttagac gaagcattta acgcgtctgc atatacctga
2251 gctaaatgct ggccctctcc tcttgcactt ctggcatcga cttggaaaag
2301 tccagcgtca agaaattccc ctcccttttc aatgtaagct ttgacatcgg
2351 acgatgattt agctccctga atgttcggat ggaaatgtgt tgatcgggat
2401 ggggaaatga gatcgaagaa tctcgggttg gtacattgga acttgccttc
2451 gaattggatg agaacatgga gatgaggcac cccatcctga tgtagttctc
2501 tgcaaaccct aatgaatttg atattcgtcg ggtacgaaag ggcttgtaat
2551 tgggaaaggg cctcttcttt tgttaatgag catcgggaat aggttatgaa
2601 ataatttttg gcatttattt gaaaacgacc ggctcttggc atattggctg
2651 tcgttttgga tcgggggaca ctcaaaactc caggggaacg gtggaatggg
2701 gggcattata tatgatgtcc cccaatggca tatgtgtaaa taggtagact
2751 tccattcaaa atttgaatgc cgaatattgg cggccatccg attaatatt