Sequence of DPV East African cassava mosaic Kenya virus
East African cassava mosaic Kenya virus segment DNA A, complete sequence, isolate EACMKV-[K307]
ACC No: AJ717576
Dated: 2006-09-14 | Length: 2798 | CRC: -1334903660
ID AJ717576; SV 1; circular; genomic DNA; STD; VRL; 2798 BP.
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AC AJ717576;
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DT 09-MAR-2006 (Rel. 87, Created)
DT 14-SEP-2006 (Rel. 89, Last updated, Version 5)
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DE East African cassava mosaic Kenya virus segment DNA A, complete sequence,
DE isolate EACMKV-[K307]
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KW AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein;
KW AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein.
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OS East African cassava mosaic Kenya virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2798
RA Bull S.E.;
RT ;
RL Submitted (19-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre,
RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM.
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RN [2]
RA Bull S.E.;
RT "Diversity of cassava-infecting geminiviruses in Kenya";
RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK.
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RN [3]
RA Bull S.E., Briddon R.W., Sserubombwe W.S. ., Ngugi K., Markham P.G.,
RA Stanley J.;
RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya";
RL J. Gen. Virol. 87:3053-3065(2006).
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RN [4]
RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G. .,
RA Stanley J.;
RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya";
RL J. Gen. Virol. 87(Pt 10):3053-3065(2006).
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FH Key Location/Qualifiers
FH
FT source 1. .2798
FT /organism="East African cassava mosaic Kenya virus"
FT /segment="DNA A"
FT /specific_host="Manihot esculenta"
FT /isolate="EACMKV-[K307]"
FT /mol_type="genomic DNA"
FT /country="Kenya:Machakos, Matuu/Kikumini"
FT /clone="K307FA-4[2002]"
FT /virion
FT /db_xref="taxon:393599"
FT CDS 175. .531
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2 protein"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q2A8C2"
FT /protein_id="CAJ78298.1"
FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQIMGQQTHVS
FT EAQDVQNVSKPRCP"
FT CDS 335. .1108
FT /codon_start=1
FT /gene="AV1"
FT /product="AV1 protein"
FT /db_xref="GOA:Q2A8C1"
FT /db_xref="InterPro:IPR000143"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q2A8C1"
FT /protein_id="CAJ78299.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKLWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR
FT VGKRFCVKSIYILGKIWMDENVKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE
FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT CDS complement(1105. .1509)
FT /codon_start=1
FT /gene="AC3"
FT /product="AC3 protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:Q2A8C0"
FT /protein_id="CAJ78300.1"
FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFEITNHDKRPGTMNHDI
FT ITLQIRFNHNLRKALGIHKCFLNFRVWTTLRPQTGLFLRVFRYQVLKYLDMIGVISINT
FT VLQAVDHVLYDVLLNTLQVTEQHAIKFNLY"
FT CDS complement(1250. .1657)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2 protein"
FT /db_xref="GOA:Q2A8B9"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:Q2A8B9"
FT /protein_id="CAJ78301.1"
FT /translation="MPPSSPSTSHCSLVPIKVQHCTAKTRAVRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRNHQPRQEARDHEPRHHHTPDTVQPQ
FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI"
FT CDS complement(1566. .2645)
FT /codon_start=1
FT /gene="AC1"
FT /product="AC1 protein"
FT /db_xref="GOA:Q2A8B8"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q2A8B8"
FT /protein_id="CAJ78302.1"
FT /translation="MPRAGRFSIKAKNYFLTYPKCSLSKEEALDQIRQLQTPTNKLFIK
FT ICRELHENGEPHLHALIQFEGKYNCTNNRFFDLISPSRSTHFHPNIQGAKSSSDVQSYM
FT DKDGDTIQWGKFQIDGRSARGGQQSANDAYAKALNSANKSEALNVIRELAPKDFVLQFH
FT NLNSNLDRIFQEPLTPYVSPFLSSSFTNVPEELEDWVSENVMGSAARPWRPSSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDYVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITLHEPL
FT FSSAHQSPTLHSEDQGRQT"
FT CDS complement(2198. .2494)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:Q2A8B7"
FT /protein_id="CAJ78303.1"
FT /translation="MKMGNLICMPSFSSRANTIVPTIDSSTSYPLPGQHISIQTFRELN
FT QAPTSSPIWTRTGTPSNGASFRSTDDLLEEDNNQPMTLTQRLLTQQISQRLLM"
XX
SQ Sequence 2798 BP; 716 A; 564 C; 728 G; 790 T; 0 other;
aj717576 Length: 2798 14-SEP-2006 Type: N Check: 3588 ..
1 accggatggc cgcgcccgaa aaaagcaggt ggaccccaca ggatggccgc
51 gcccgtgaaa gaaagtggtc cctgcgcact tgttttggtc ggccagtcat
101 attcacgcgt gaaagtctag atatttgttg tttgtcttta tagacttcgt
151 cgcgaagtag tggagcgcgt caacatgtgg gatccattgt tgaacgactt
201 tcccgaaacc gttcacggtt tccgttctat gcttgctgtt aaatacctgt
251 tacatctgga acaggaatac gatcgcggta ctgtcggggc tgagtatata
301 cgggatctaa taggggttct acggtgtaag agttatgtcg aagcgaccag
351 gagatataat aatctcaaca cccgtatcca aggtgcggag gaggctgaac
401 ttcgacagcc catacacgaa ccgtgttgtt gcccccactg tccgcgtcac
451 cagaagcaaa ttatgggcca acagacccat gtatcggaag cccaagatgt
501 acagaatgta tcgaagccca gatgtcccta agggctgtga aggcccatgt
551 aaggttcagt cctatgaaca gagggatgat gttaagcaca ctggtatggt
601 ccgatgtgtc agtgatgtta cgcgtgggtc aggcattacc catagagtcg
651 ggaagaggtt ttgtgttaag tccatatata tattgggcaa gatctggatg
701 gatgagaatg tcaagaagca aaatcacacg aaccatgtga tgttcttcct
751 cgtgcgagat agaaggccgt atggtccgag tcctcaagat tttgggcaag
801 tgttcaacat gtttgataat gaaccaacta ctgcaactgt gaagaatgat
851 cttagggacc ggtatcaggt gttacgtaaa ttctatgcga ctgttgttgg
901 tggaccctct gggatgaagg aacaagctct ggttaagagg ttttttagga
951 tcaataatca tgttgtgtat aatcatcagg aacaggccaa gtatgagaat
1001 catactgaga atgcgttgtt attgtatatg gcatgtacac atgcctctaa
1051 tcctgtgtac gctacgctga aaatacgcat ctatttttat gatgcagtga
1101 caaattaata aaggttgaat tttattgcat gttgctccgt aacttggagc
1151 gtgtttagta atacatcgta cagaacatga tcaacagctt gaagtacagt
1201 gttaatggaa ataacgccta tcatatctaa atacttgagc acttgatatc
1251 taaatactct taagaaaaga ccagtctgag gccgtaaggt cgtccagacc
1301 ctgaagttga gaaaacactt gtgaatcccc aatgccttcc ggaggttgtg
1351 gttgaaccgt atctggagtg tgatgatgtc gtggttcatg gtccctggcc
1401 tcttgtcgtg gttggtgatt tcgaaataga ggggatttgt tatttcccag
1451 gtaaaaacgc cattctttgc ttgaggcgca gtgatgagtt cccctgtgcg
1501 agaatccatg gttgatgcag tcgatatgga gatagaacga gcagccgcat
1551 tcgaggtcta cccgcctacg tctgacggcc ctggtcttcg ctgtgcagtg
1601 ttggactttg atgggcacta gagaacaatg gctcgtggag ggtgatgaag
1651 gtggcattct ttaaagccca ggctttaagg gactggttct tttcctcgtc
1701 cagaaactct ttatatgatg atgttggtcc gggattgcag aggaagatag
1751 tgggaatgcc gcctttaatt tgaattggct tcccgtactt tgtattgctt
1801 tgccagtctc tttgggcccc catgaattct ttgaagtgtt tgaggtagtg
1851 ggggtcgacg taatcaatga cgttgtacca ggcgtcgttg ctgtagacct
1901 ttggactaag atccaggtgt ccacacaagt agttgtgtgg tcccagagag
1951 cgggcccaca tcgtcttccc cgtcctacta tcgccctcga tgacgatact
2001 actcggtctc catggccgcg cagcggaacc catcacgttc tcggaaaccc
2051 aatcttcaag ttcctcagga acgttagtga aagaagatga aagaaatgga
2101 gaaacataag gagtcagagg ctcttgaaaa atcctatcta aattgctatt
2151 taaattatga aactgtaaaa caaaatcttt tggagctagt tcgcgtatta
2201 cattaagagc ctctgactta tttgctgagt taagagcctt tgcgtaagcg
2251 tcattggctg attgttgtcc tcctcgagca gatcgtccgt cgatctgaaa
2301 cttgccccat tggatggtgt ccccgtcctt gtccatatag gactggacgt
2351 cggagcttga tttagctccc tgaatgtttg gatggaaatg tgttgaccgg
2401 gaaggggata tgaggtcgaa gaatcgattg ttggtacaat tgtatttgcc
2451 ctcgaactga atgagggcat gcagatgagg ttccccattt tcatggagtt
2501 ctctgcatat cttgatgaac aatttattgg ttggggtttg gagctgtcgg
2551 atttgatcca atgcctcttc tttggataga gagcatttgg gatatgttag
2601 gaaatagttt ttggctttga tgctaaaacg accagccctt ggcattttcg
2651 ctgtcgtata gcaatcgggg ggcactcaaa gtctgtagca atcgggggaa
2701 aggggggcaa tttatatgat gccccctaaa tggcatttat gtaaaatcct
2751 cattgaattt gaaattcaaa cgtggaaagc ggccatccgt ctaatatt