Sequence of DPV Rice stripe virus

Rice stripe virus CP gene for coat protein, isolate SLi1, genomic RNA

ACC No: AJ781027

Dated: 2004-07-01 | Length: 999 | CRC: 496412835

                !!NA_SEQUENCE 1.0
ID   AJ781027   standard; genomic RNA; VRL; 999 BP.
XX
AC   AJ781027;
XX
SV   AJ781027.2
XX
DT   01-JUL-2004 (Rel. 80, Created)
DT   01-JUL-2004 (Rel. 80, Last updated, Version 1)
XX
DE   Rice stripe virus CP gene for coat protein, isolate SLi1, genomic RNA
XX
KW   coat protein; CP gene.
XX
OS   Rice stripe virus
OC   Viruses; ssRNA negative-strand viruses; Tenuivirus.
XX
RN   [1]
RP   1-999
RA   Li F.;
RT   ;
RL   Submitted (30-JUN-2004) to the EMBL/GenBank/DDBJ databases.
RL   Li F., Plant Pathology, Institute of Plant Virology, Phytopathology
RL   Laboratory for Yunnan Province, Yunnan Province, 650201, CHINA.
XX
RN   [2]
RA   Yang J., Li F., Wu Z., Wu H., Xie L.;
RT   "Genetic diversity of CP gene of Rice stripe virus in Yunnan";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .999
FT                   /country="China:Yunnan province:Shilin"
FT                   /db_xref="taxon:12331"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Rice stripe virus"
FT                   /isolate="SLi1"
FT                   /segment="RNA3"
FT   CDS             24. .992
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="CAG70315.1"
FT                   /translation="MGTNKPATLADLQKAINDISKDALNYLTAHKADDVTFAGQIEYAG
FT                   YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT                   YGIVSSVGSNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV
FT                   PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT                   TGLLVITCKSKNLIDKKKEDGRKKVLDESITNGKVKTTIFDALAGMSVNTISTYGNQTK
FT                   LYLAQQSKLMKILAENTSKTATEVSGLVKDSFEDEAEGADD"
XX
SQ   Sequence 999 BP; 301 A; 206 C; 254 G; 238 T; 0 other;

   AJ781027  Length: 999  July 6, 2004 08:55  Type: N  Check: 790  ..

       1  ttcctccagt acctcttgct acaatgggca ccaacaagcc agccactcta
      51  gctgatttgc agaaggcaat taatgacatc tcaaaagatg cgttgaatta
     101  cctgactgct cataaagctg atgatgtgac ttttgctggt cagatagagt
     151  atgcaggcta tgatgctgca actctgattg gcatattgaa ggacaaaggt
     201  ggtgacacat tggccaagga tatgactatg tgcatcacca tgaggtatgt
     251  gagaggcact ggctttgtga gagatgtcac caagaaagtg aaagtggcgg
     301  ctggaagcac tgaggcttca accttggtgt caaggtatgg gatagtgtcc
     351  tctgtgggat caaatgccaa tgctatcaca cttgggaggt tggcacagct
     401  attcccaaat gtctcacatg aagttgtgcg acaaatttct ggtgttaaga
     451  tggctgtgga ctcttctgat ctggggctga caggatgtga caacctactg
     501  tgggactatg ttccacaata catcaaactg gagagtgaaa cagctcctta
     551  ctgcacaact cactccctta gtcacatctt gtttgtcgtg cacatcattc
     601  actccttcca aataactaaa aagaccatgc cagagggtaa gaagaaggag
     651  cgtggtctga caaaggacat agacatgatg aagtacacaa ctggtctcct
     701  ggtcatcaca tgcaagtcaa agaacttgat tgacaagaag aaggaggatg
     751  gtagaaagaa ggtcttagat gaatccatca ccaatgggaa agtgaagacc
     801  acaatcttcg atgcactggc tggtatgtct gtcaacacga tcagtacata
     851  tgggaaccag accaagctgt acttggctca acagagcaag ctgatgaaga
     901  tccttgctga gaacacttca aagacagcaa cagaagtcag cgggttggtg
     951  aaggattcct tcgaggatga ggcagaaggt gcagatgact agactgaac