Sequence of DPV Sweet potato virus C

Sweet potato feathery mottle virus partial mRNA for polyprotein, isolate Aus4c

ACC No: AJ781778

Dated: 2005-03-29 | Length: 1807 | CRC: 995951031

                !!NA_SEQUENCE 1.0
ID   AJ781778   standard; genomic RNA; VRL; 1807 BP.
XX
AC   AJ781778;
XX
SV   AJ781778.1
XX
DT   29-MAR-2005 (Rel. 83, Created)
DT   29-MAR-2005 (Rel. 83, Last updated, Version 1)
XX
DE   Sweet potato feathery mottle virus partial mRNA for polyprotein, isolate
DE   Aus4c
XX
KW   coat protein; CP; NIb protein; nuclear inclusion body protein; polyprotein.
XX
OS   Sweet potato feathery mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1807
RA   Tairo F.;
RT   ;
RL   Submitted (07-JUL-2004) to the EMBL/GenBank/DDBJ databases.
RL   Tairo F., Plant Biology and Forest Genetics,, Swedish Univ of Agric
RL   Sciences (SLU), Genetic Centre, Box 7080, SE 750 07, Uppsala, SWEDEN.
XX
RN   [4]
RA   Tairo F., Mukasa S.B., Jones R.A.C., Kullaya A., Rubaihayo P.R.,
RA   Valkonen J.P.T.;
RT   "Unravelling the genetic diversity of the three main viruses involved
RT   inSweet Potato Virus Disease (SPVD), and its practical implications.";
RL   Mol. Plant Pathol. 6(2):199-211(2005).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1807
FT                   /country="Australia:Western"
FT                   /db_xref="taxon:12844"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Sweet potato feathery mottle virus"
FT                   /isolate="Aus4c"
FT                   /isolation_source="Ipomea batatas"
FT   CDS             <1. .1584
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="CAH03770.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVLAVYYTLLKLGVLELEISERCVFFANG
FT                   DDLLIAMRPDTAHLLDNFGECFAELGLNYDFSSRTTKKEELWFMSHCGVKRDGIYIPKL
FT                   EPERIVSILEWDRSHEPIHRLEAICAAMVEAWGYDELLHQIRRFYAWVLGQAPYSELAR
FT                   TGKAIYAETALRSLYTGVQPSADDLSEYTRVLNEMYDDSLLQDNDLTVYHQSGNPPEFK
FT                   DAGANPPAPKPKGAFTAPEITEVTEPEDPRQAALREARQKQPAVTPESYSRDTGEKPMR
FT                   SISPQRVKDKDVNVGTTGTFLVPRVKLHTSKMRQPRVNGISVVNLQHLATYEPEQHNIG
FT                   NTRSTQEQFQAWYEGVKGDYGVNDAGMSILLNGLMVWCIENGTSPNINGVWTMMDGDEQ
FT                   VTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYA
FT                   FDFYELHSTTPTRAKEAHMQMKAAALKNAHNRLFGLDGNVSTQEEDTERHTATDVTRNI
FT                   HNLLGMRGVH"
FT   mat_peptide     <1. .645
FT                   /note="NIb"
FT                   /product="nuclear inclusion body protein"
FT   mat_peptide     646. .1581
FT                   /note="CP"
FT                   /product="coat protein"
FT   3'UTR           1594. .1807
XX
SQ   Sequence 1807 BP; 545 A; 362 C; 430 G; 468 T; 2 other;

 AJ781778  Length: 1807  April 11, 2005 10:46  Type: N  Check: 7349  ..

       1  ggcaacaata gtggrcarcc atcaaccgtc gtggacaata cattgatggt
      51  tgtgctagcc gtctactaca ctttgttgaa attgggtgtt ttggagctcg
     101  agatcagtga acggtgtgta ttcttcgcaa atggggatga tttactgata
     151  gctatgaggc cagatacagc tcatcttttg gataacttcg gtgagtgctt
     201  tgctgagctt gggcttaact atgacttctc atcaagaaca actaagaagg
     251  aagaattatg gttcatgtct cactgtggag tcaaacgaga tggaatatac
     301  attccaaaac tcgaacctga acgaatagta tctattcttg aatgggatag
     351  atcacatgag cctatacaca ggctcgaagc aatttgtgct gcaatggtgg
     401  aagcgtgggg ttatgacgaa cttctccacc aaattagaag attctatgca
     451  tgggtcttgg gacaagcacc atacagtgaa ctagcacgaa ctggaaaggc
     501  catatatgct gaaactgcac ttagatcact gtacactgga gtgcaaccta
     551  gcgctgacga tctcagcgag tacacacgtg ttcttaacga gatgtatgat
     601  gatagccttc ttcaagacaa tgatttaacg gtgtatcatc aatctggtaa
     651  cccccctgaa tttaaagatg caggtgcgaa cccaccagca ccaaagccaa
     701  aaggggcatt tacagcacca gaaatcacag aagttactga gccggaggat
     751  cccagacaag ctgcgcttcg cgaagctaga cagaaacaac ctgctgtcac
     801  acccgagtca tacagtagag acacaggtga gaaacctatg cgttctattt
     851  caccacaaag ggtgaaagac aaagatgtca acgttggcac gacaggcaca
     901  tttttggttc cacgagttaa gctccatact agcaagatgc gccaacctag
     951  agtcaatgga atctctgtag taaacttaca acacctcgca acttatgaac
    1001  ctgagcagca taacattggg aatacacgct caactcagga acagtttcaa
    1051  gcatggtatg aaggtgttaa gggtgattat ggtgttaatg acgctggaat
    1101  gtcaatcttg ttgaatggat tgatggtatg gtgcatagag aatggaacat
    1151  ccccaaatat aaatggcgtt tggacgatga tggatgggga tgaacaagta
    1201  acgtacccca taaagccatt actggatcat gcagtgccta cttttaggca
    1251  aatcatgaca cacttcagtg acgttgctga agcgtatata gaaatgagga
    1301  atcgcaccaa ggcatatatg cctaggtatg gattacaacg taacttgact
    1351  gatatgagtc ttgcgcgata tgcatttgat ttctatgagc tgcactcaac
    1401  aacacctaca cgtgctaaag aagcacacat gcagatgaaa gcagctgcac
    1451  ttaagaatgc gcataatcgg ttgtttggtt tagatggaaa cgtctcaacg
    1501  caagaagagg atacggagag gcacactgcg actgatgtta ctagaaatat
    1551  acataacctc ttaggaatga ggggtgtgca ctaggtggaa ctttgcactg
    1601  tattcattta cttatgtggt ttttagtatg cctttatttt aaattcgtgt
    1651  ccttcagtcc cgacagagat ggttgggtgt attgacagag tgggctttta
    1701  gcctggtcca tacactcgag aaatttctgg tctattacgt atcataaggg
    1751  actcttaaaa gtgaggagta cctcgtaaga aaagcctttt tggttcgtga
    1801  tcgagcc