Sequence of DPV Sweet potato mild mottle virus

Sweet potato mild mottle virus partial gene for polyprotein, genomic RNA, isolate Tar2

ACC No: AJ783451

Dated: 2005-03-29 | Length: 1814 | CRC: 881865178

                !!NA_SEQUENCE 1.0
ID   AJ783451   standard; genomic RNA; VRL; 1814 BP.
XX
AC   AJ783451;
XX
SV   AJ783451.1
XX
DT   29-MAR-2005 (Rel. 83, Created)
DT   29-MAR-2005 (Rel. 83, Last updated, Version 1)
XX
DE   Sweet potato mild mottle virus partial gene for polyprotein, genomic RNA,
DE   isolate Tar2
XX
KW   coat protein; CP gene; NIb gene; nuclear inclusion b protein; polyprotein.
XX
OS   Sweet potato mild mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
XX
RN   [1]
RP   1-1814
RA   Tairo F.;
RT   ;
RL   Submitted (06-JUL-2004) to the EMBL/GenBank/DDBJ databases.
RL   Tairo F., Plant Biology and Forest Genetics,, Swedish Univ of Agric
RL   Sciences (SLU), Genetic Centre, Box 7080, SE 750 07, Uppsala, SWEDEN.
XX
RN   [3]
RA   Tairo F., Mukasa S.B., Jones R.A.C., Kullaya A., Rubaihayo P.R.,
RA   Valkonen J.P.T.;
RT   "Unravelling the genetic diversity of the three main viruses involved
RT   inSweet Potato Virus Disease (SPVD), and its practical implications.";
RL   Mol. Plant Pathol. 6(2):199-211(2005).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1814
FT                   /country="Tanzania:Tarime"
FT                   /db_xref="taxon:41459"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Sweet potato mild mottle virus"
FT                   /isolate="Tar2"
FT                   /isolation_source="Ipomea batatas"
FT   CDS             <1. .1506
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="CAH04283.1"
FT                   /translation="GNNSGQPSTVVDNTLILMIAMEYAISKVFVTRPDIKYVCNGDDLL
FT                   INCPRVTASAISEHFKDAFADLSLNYDFDHVCDSITDVDFMSHSFMWLDAEQMYIPKLD
FT                   KERIVAILEWERSDEQFRTRSALNAAYIESFGYEDLMVEIEKFAHFWAKEHGLNDVLMG
FT                   REKVRDLYVNEDFDASAFEKFYPETFSPFDVYVEPHASTSKTIEELQQEMEDLDADTTI
FT                   TVVQKETQKARIRDQIEALRAQQIVRPPEAQLQPDVTPTQIVTFEPPRVTGFGALWIPR
FT                   QQRNYMTPAYIEKIKAYVPHSNLIESGLASEAQLTSWFENTSRDYQVSMDVFMSSILPA
FT                   WIVNCIINGTSQERTNEHTWRAVIMANMEDQEVLYYPIKPIIINAQPTLRQVMRHFGEQ
FT                   AVAQYMNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMQLTTKQMEVKHQIIAAN
FT                   VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD"
FT   3'UTR           1507. .1814
FT   mat_peptide     1. .678
FT                   /gene="NIb"
FT                   /product="nuclear inclusion b protein"
FT   mat_peptide     679. .1503
FT                   /gene="cp"
FT                   /product="coat protein"
XX
SQ   Sequence 1814 BP; 520 A; 349 C; 457 G; 488 T; 0 other;

 AJ783451  Length: 1814  April 11, 2005 10:46  Type: N  Check: 7768  ..

       1  ggtaataaca gtggtcagcc ctcaacagtt gttgataaca cgttgatcct
      51  gatgattgct atggaatatg cgatatccaa ggtttttgtt acacgccccg
     101  acatcaagta tgtctgtaat ggggatgacc tcttaatcaa ttgtccaagg
     151  gtcactgcaa gcgccattag tgaacatttc aaagatgcat tcgcagactt
     201  aagtttgaac tatgattttg atcatgtatg tgactcaatt acagatgttg
     251  attttatgag tcatagcttc atgtggttgg atgctgagca gatgtatata
     301  ccaaagctgg acaaggagcg aattgtagca attttggagt gggaaaggag
     351  tgatgagcaa tttagaacaa ggagcgccct gaatgctgct tatattgaga
     401  gttttgggta tgaagatttg atggttgaga ttgaaaaatt tgctcatttt
     451  tgggcgaaag agcacggtct caatgatgtc ttgatggggc gagaaaaggt
     501  cagagacttg tacgttaatg aagatttcga tgcgtcagcc tttgagaagt
     551  tctatccgga aacattttca cctttcgacg tttatgttga accacacgca
     601  tcgacatcta agacaatcga agaactgcag caagaaatgg aggatttgga
     651  cgcagacaca acaatcactg tggtccagaa ggaaacacag aaggcgagga
     701  taagagacca aattgaggca cttagggcac aacaaattgt gagacctcct
     751  gaagcacagc tacagcctga cgtgactccc actcaaattg tcacgttcga
     801  accaccaaga gtcactggat ttggcgcttt gtggattccg cgccaacaaa
     851  ggaactacat gacgccagct tacatcgaga agataaaggc ttatgttcca
     901  cattcaaact tgattgaatc tggactagct agtgaagctc aattgactag
     951  ttggttcgag aacacgagca gagattatca agttagtatg gatgtcttca
    1001  tgagttcaat actgccagca tggattgtca attgtataat caatgggaca
    1051  tcacaggagc gcactaatga gcacacatgg agggctgtga tcatggcgaa
    1101  tatggaggac caagaagtac tttactaccc catcaagccc ataataatca
    1151  atgctcaacc aactctgagg caggtgatgc gccatttcgg ggaacaagcc
    1201  gttgcacaat acatgaacag ccttcaagtt gggaaacctt ttacagtgaa
    1251  aggtgccgtg actgctggtt acgctaatgt tcaagatgct tggctaggta
    1301  ttgactttct tcgggataca atgcagttga cgacaaaaca gatggaagtt
    1351  aagcatcaga ttatcgcagc gaacgttacg aggcggaaaa tccgtgtttt
    1401  tgctcttgca gcaccggggg atggcgacga attagacaca gaaaggcacg
    1451  tcgtcgacga tgtggctagg ggccgtcata gtctgagagg agctcaactc
    1501  gactaaatga gcacgttatc tttactttca atcgcgtgtt tttattttaa
    1551  ttacgtttta cgctttgtgt ttgtttgttg tggcacttga accaggtaca
    1601  gctggcaggt gtttcggcat ggcgtggtta gacaattggt tcgcaccggt
    1651  ggtctaagaa gcgctatgta tcacgtggtt ggttaattca taatctgtat
    1701  ggatcaatcg agaagcgtct atcgcccaaa agggcaccag aaaatggttg
    1751  cgtcattcgt ggcgtaatca gtttttggag tttggctagg taacttgttg
    1801  cctatccaaa agcc