Sequence of DPV Sweet potato mild mottle virus

Sweet potato mild mottle virus partial gene for polyprotein, genomic RNA, isolate Bkb3

ACC No: AJ783452

Dated: 2005-03-29 | Length: 1816 | CRC: -2087743019

                !!NA_SEQUENCE 1.0
ID   AJ783452   standard; genomic RNA; VRL; 1816 BP.
XX
AC   AJ783452;
XX
SV   AJ783452.1
XX
DT   29-MAR-2005 (Rel. 83, Created)
DT   29-MAR-2005 (Rel. 83, Last updated, Version 1)
XX
DE   Sweet potato mild mottle virus partial gene for polyprotein, genomic RNA,
DE   isolate Bkb3
XX
KW   coat protein; CP gene; NIb gene; nuclear inclusion b protein; polyprotein.
XX
OS   Sweet potato mild mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
XX
RN   [1]
RP   1-1816
RA   Tairo F.;
RT   ;
RL   Submitted (06-JUL-2004) to the EMBL/GenBank/DDBJ databases.
RL   Tairo F., Plant Biology and Forest Genetics,, Swedish Univ of Agric
RL   Sciences (SLU), Genetic Centre, Box 7080, SE 750 07, Uppsala, SWEDEN.
XX
RN   [3]
RA   Tairo F., Mukasa S.B., Jones R.A.C., Kullaya A., Rubaihayo P.R.,
RA   Valkonen J.P.T.;
RT   "Unravelling the genetic diversity of the three main viruses involved
RT   inSweet Potato Virus Disease (SPVD), and its practical implications.";
RL   Mol. Plant Pathol. 6(2):199-211(2005).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1816
FT                   /country="Tanzania:Bukoba"
FT                   /db_xref="taxon:41459"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Sweet potato mild mottle virus"
FT                   /isolate="Bkb3"
FT                   /isolation_source="Ipomea batatas"
FT   CDS             <1. .1506
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="CAH04284.1"
FT                   /translation="GNNSGQPSTVVDNTLILMIAMEYAIAKVFVTRPDIKYVCNGDDLL
FT                   INCPRATASAISEHFKDAFADLSLNYDFDHVCDSITDVDFMSHSFMWLDAEQMYIPKLD
FT                   KERIVAILEWERSDEQFRTRSALNAAYIESFGYKDLMDEIEKFAHFWAKEHGLNDVLME
FT                   REKVRDLYVNEDFDASAFEKFYPETFSPFDVYVEPHASTSKTIEELQQEMEDLDADTTI
FT                   TVVQRETQKARIREQIETLRAQQMVRPSEAQLQPDVTPTQIVTFEPPRVTGFGALWIPR
FT                   QQRNYMTTAYIEKIKAYVPHSNLIESGLASEAQLTSWIENTCRDYQVSMDVFMTTVLPA
FT                   WIVNCIINGTSQERTNEHTWRAVIMANMEDQEVLYYPIKPIIVNAQPTLRQVMRHFGEQ
FT                   AVAQYMNSLQAGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMQLTTKQMEVKHQIIAAN
FT                   VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD"
FT   3'UTR           1507. .1816
FT   mat_peptide     1. .678
FT                   /gene="NIb"
FT                   /product="nuclear inclusion b protein"
FT   mat_peptide     679. .1503
FT                   /gene="cp"
FT                   /product="coat protein"
XX
SQ   Sequence 1816 BP; 522 A; 334 C; 459 G; 501 T; 0 other;

 AJ783452  Length: 1816  April 11, 2005 10:46  Type: N  Check: 2466  ..

       1  ggcaacaaca gtgggcagcc ctcaacagtt gttgataaca cgttgatcct
      51  gatgattgct atggaatatg cgatagctaa ggtttttgtc acacgccctg
     101  acatcaagta tgtctgtaat ggggatgacc tcttgatcaa ttgcccaagg
     151  gccactgcaa gcgccattag tgaacacttc aaagacgcat ttgcagactt
     201  aagcttgaac tatgattttg atcatgtatg tgattcaatt acagatgttg
     251  attttatgag tcatagcttc atgtggttag atgctgagca gatgtatata
     301  ccaaagctgg acaaggagcg aattgtggca attttggagt gggaaagaag
     351  tgatgagcaa ttcagaacaa ggagtgccct gaacgctgct tatattgaaa
     401  gttttggata taaagatttg atggatgaga ttgaaaaatt tgctcatttt
     451  tgggcaaaag agcatggtct caatgatgtc ttgatggagc gagagaaggt
     501  tagagacttg tacgttaatg aagattttga tgcgtcagcc tttgagaagt
     551  tctatccaga aacattttcg ccatttgatg tttacgttga gccacatgca
     601  tcgacatcca agacaatcga agagttgcag caagaaatgg aggatctgga
     651  tgcagataca acaatcactg tggttcaaag ggaaacacag aaggcgagaa
     701  taagggaaca aattgagaca cttagggcac agcaaatggt gagaccttct
     751  gaggcacaac tacagcctga cgtaacaccc acgcaaattg tcacgtttga
     801  gccaccgaga gtcacaggat ttggtgcttt atggattccg cgccagcaaa
     851  ggaactacat gacgactgct tacattgaga agataaaggc ttatgttcca
     901  cactcaaact tgattgaatc tgggctagct agtgaagctc agttgactag
     951  ttggattgaa aatacgtgca gggactatca agttagtatg gacgtcttca
    1001  tgactacagt actgccagca tggattgtca attgcataat taatggaacg
    1051  tctcaggagc gtactaatga acatacatgg agagctgtga ttatggcaaa
    1101  tatggaagac caggaggtgc tttattaccc tatcaagccc ataattgtga
    1151  acgctcaacc aactttgagg caggtgatgc gtcattttgg cgagcaagcc
    1201  gttgctcaat acatgaatag tcttcaagcc ggaaaacctt tcacggtgaa
    1251  aggcgccgta actgctggtt acgctaacgt tcaagatgct tggttgggta
    1301  ttgactttct ccgagacacg atgcagttga caacaaaaca gatggaagtc
    1351  aagcaccaga ttatcgcagc gaatgttaca aggcggaaaa ttcgtgtttt
    1401  tgctcttgca gcaccaggag atggcgatga actggataca gaaaggcatg
    1451  ttgttgacga tgttgctaga ggtcgtcaca gtctgagagg agctcaactc
    1501  gactaaatga gcatgttatc tttaatttca actgcgtgtt ttcttatttt
    1551  aattgcgtgt tatgctttgt gtttgtttgt tgtggcactt gaaccaggta
    1601  cagctggcag gtgtttcggc atggtgtggt tagacaattg gttcgaaccg
    1651  gtagtctaag aagcgccatg tgtcacgtgg ttggttaatt catattttat
    1701  atgggttaat caagaagcgt ctatcgccca aaagggtacc agccaatgct
    1751  tgcgtcattc gtggcgtaat cagtttttgg agtttggctg ggtaacttgt
    1801  cgcctatcca aaagcc