Sequence of DPV Sweet potato mild mottle virus

Sweet potato mild mottle virus partial gene for polyprotein, genomic RNA, isolate Mis2.

ACC No: AJ783453

Dated: 2005-03-29 | Length: 1820 | CRC: -332641362

                !!NA_SEQUENCE 1.0
ID   AJ783453   standard; genomic RNA; VRL; 1820 BP.
XX
AC   AJ783453;
XX
SV   AJ783453.1
XX
DT   29-MAR-2005 (Rel. 83, Created)
DT   29-MAR-2005 (Rel. 83, Last updated, Version 1)
XX
DE   Sweet potato mild mottle virus partial gene for polyprotein, genomic RNA,
DE   isolate Mis2.
XX
KW   coat protein; CP gene; NIb gene; nuclear inclusion b protein; polyprotein.
XX
OS   Sweet potato mild mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
XX
RN   [1]
RP   1-1820
RA   Tairo F.;
RT   ;
RL   Submitted (06-JUL-2004) to the EMBL/GenBank/DDBJ databases.
RL   Tairo F., Plant Biology and Forest Genetics,, Swedish Univ of Agric
RL   Sciences (SLU), Genetic Centre, Box 7080, SE 750 07, Uppsala, SWEDEN.
XX
RN   [3]
RA   Tairo F., Mukasa S.B., Jones R.A.C., Kullaya A., Rubaihayo P.R.,
RA   Valkonen J.P.T.;
RT   "Unravelling the genetic diversity of the three main viruses involved
RT   inSweet Potato Virus Disease (SPVD), and its practical implications.";
RL   Mol. Plant Pathol. 6(2):199-211(2005).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1820
FT                   /country="Tanzania:Misungwi"
FT                   /db_xref="taxon:41459"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Sweet potato mild mottle virus"
FT                   /isolate="Mis2"
FT                   /isolation_source="Ipomea batatas"
FT   CDS             <1. .1506
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="CAH04285.1"
FT                   /translation="GNNSGLPSTVVDNTLILMIAMEYAIAKVFVTRPDIKYVCNGDDLL
FT                   INCPRATASAISEHFKDAFADLSLNYDFDHVCDKIADVDFMSHSFMWLDAEQIYAPKLD
FT                   KERIVAILEWERSDEQFRTRSALNAAYIESFGYEDLMTEIEKFAHFWAKKHGLNDVLME
FT                   REKVRDLYINEDFDASAFEKLYPETFSPFDVYVEPHASTSKTIEELQKEMEDLDADSTI
FT                   TVVQRETQKARIREQIETLRAQQLVRPSEAQLQPDVNPTQIVTFEPPRATGFGALWIPR
FT                   QQRNYMTPAYIEKIKAYVPHSNLIESGLASEAQLTSWFENTSRDYQVSMDVFMSTILPA
FT                   WIVNCIINGTSQERTNEHTWRAVIMANMEDQEVLYYPIKPIIINAQPTLRQVMRHFGEQ
FT                   AVAQYMNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMQLTTKQMEVKHQIIAAN
FT                   VTRRKVRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD"
FT   3'UTR           1507. .1820
FT   mat_peptide     1. .678
FT                   /gene="NIb"
FT                   /product="nuclear inclusion b protein"
FT   mat_peptide     679. .1503
FT                   /gene="cp"
FT                   /product="coat protein"
XX
SQ   Sequence 1820 BP; 540 A; 343 C; 450 G; 487 T; 0 other;

 AJ783453  Length: 1820  April 11, 2005 10:46  Type: N  Check: 8736  ..

       1  ggtaataaca gcgggctacc ttcaacagtt gtcgataaca cgttgattct
      51  gatgattgct atggagtatg cgatagccaa ggtttttgtc acacgccctg
     101  acatcaaata tgtctgtaat ggggatgatc tattaattaa ttgtccaagg
     151  gccaccgcaa gcgcaattag cgaacacttt aaagacgcat tcgcagactt
     201  gagcttaaac tatgattttg accacgtctg tgataaaatt gcagacgttg
     251  attttatgag tcatagcttc atgtggctag atgctgagca gatatatgca
     301  ccaaagctgg acaaggagcg aattgtagca attttggaat gggaaaggag
     351  cgacgagcaa ttcagaacaa ggagcgcctt gaacgctgct tatattgaga
     401  gttttggata tgaagatttg atgactgaga ttgaaaaatt tgctcacttt
     451  tgggctaaga aacatggtct caatgacgtc ttgatggaaa gagagaaggt
     501  tagagactta tacattaatg aagatttcga tgcgtcagct tttgagaagc
     551  tttacccgga aacattttcg ccatttgatg tttatgttga gccacatgca
     601  tcgacatcca agacaattga agagctacag aaagaaatgg aggatttgga
     651  tgcagactca acaattactg tggttcagag ggagacacag aaggcgagaa
     701  taagagagca aattgagaca cttagggcac aacaacttgt gagaccttct
     751  gaggcacagc tacagcctga tgtaaatccc acacaaatag tcacatttga
     801  accaccaaga gccactggat ttggcgctct atggattccg cgtcaacaaa
     851  ggaactacat gacgccagct tacatcgaga agataaaggc ttatgttcca
     901  cattcaaact tgattgaatc tggactagct agtgaagctc aattgactag
     951  ttggttcgag aacacaagca gggattacca agttagtatg gatgtcttca
    1001  tgagtacaat attgccagca tggattgtca actgcataat caatggaaca
    1051  tcccaagagc gcactaatga acacacatgg agagctgtga tcatggcgaa
    1101  tatggaggat caggaagtgc tttattaccc catcaagccc ataataatta
    1151  atgctcaacc aactctgagg caggtgatgc gccattttgg agaacaagcc
    1201  gttgctcaat acatgaatag cctgcaagtt gggaaacctt ttacagtgaa
    1251  aggtgccgta actgctggtt acgctaatgt tcaagatgct tggctaggca
    1301  ttgactttct tcgggacaca atgcagttga cgacaaaaca gatggaagtc
    1351  aagcatcaaa tcatcgcagc gaacgttaca aggcggaagg ttcgagtttt
    1401  tgctcttgca gcaccgggag atggcgatga actagacaca gaaaggcacg
    1451  tcgtcgacga tgtggccagg ggccgtcata gtctgagagg agctcaactc
    1501  gactaaatga gcatgtaatc tttaatttca actgcgtggt tttcttgtta
    1551  tttcaattac gttttgtgtt ttgtgtttgt ttgttgtggc acttgaacca
    1601  ggtacagctg gcaggtgttt cggcatggtg tggttagaca attggtttgc
    1651  accggtggtc taagaagcgc tatgtatcac gtggttggtt gattcatagt
    1701  ttatatgggt taatcaagaa gcatctatcg cccaaaaggg caccagaaaa
    1751  tggttgcgtc attcgtggcg taatcagttt ttggagtttg gctaggtaac
    1801  ttgttgccta tccaaaagcc