Sequence of DPV Cucumber mosaic virus
Cucumber mosaic virus partial MP gene for 3a protein and CP gene for coat protein, genomic RNA, isolate MAD99/3
ACC No: AJ829775
Dated: 2005-04-15 | Length: 1831 | CRC: 514743604
!!NA_SEQUENCE 1.0
ID AJ829775 standard; genomic RNA; VRL; 1831 BP.
XX
AC AJ829775;
XX
SV AJ829775.1
XX
DT 03-FEB-2005 (Rel. 82, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE Cucumber mosaic virus partial MP gene for 3a protein and CP gene for coat
DE protein, genomic RNA, isolate MAD99/3
XX
KW 3a protein; coat protein; CP gene; MP gene.
XX
OS Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC Cucumovirus.
XX
RN [1]
RP 1-1831
RA Fraile A.;
RT ;
RL Submitted (07-SEP-2004) to the EMBL/GenBank/DDBJ databases.
RL Fraile A., Biotecnologia, Universidad Politecnica de Madrid,
RL E.T.S.Ingenieros Agronomos, Ciudad Universitaria, 28040-Madrid, SPAIN.
XX
RN [2]
RX DOI; 10.1016/j.virol.2004.11.017.
RX PUBMED; 15661167.
RA Bonnet J., Fraile A., Sacristan S., Malpica J.M., Garcia-Arenal F.;
RT "Role of recombination in the evolution of natural populations of Cucumber
RT mosaic virus, a tripartite RNA plant virus";
RL Virology 332(1):359-368(2005).
XX
FH Key Location/Qualifiers
FH
FT source 1. .1831
FT /country="Spain:Madrid"
FT /db_xref="taxon:12305"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Cucumber mosaic virus"
FT /isolate="MAD99/3"
FT /specific_host="melon"
FT /segment="3"
FT CDS <1. .786
FT /codon_start=1
FT /db_xref="GOA:Q5GPJ0"
FT /db_xref="UniProt/TrEMBL:Q5GPJ0"
FT /gene="MP"
FT /product="3a protein"
FT /protein_id="CAH25532.1"
FT /translation="SDDLQKILFSPEAIRKMATECDLGRHHWMRADNAISVRPLVPEVT
FT HGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTEAEGSLRIYLADLGDKELSPI
FT DGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIERHGYIGYTGTTASVCSNW
FT QARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLKSQLNNIESSQYVLTDSKI
FT NQNARSESEDLNVESPPAAIGSSSASRSEAFRPQVVNGL"
FT CDS 1084. .1740
FT /db_xref="GOA:Q5GPI9"
FT /db_xref="UniProt/TrEMBL:Q5GPI9"
FT /gene="CP"
FT /product="coat protein"
FT /protein_id="CAH25533.1"
FT /translation="MDKSESTSAGRNRRRRPRRGSRSAPSSADANFRVLSHQLSRLNKT
FT LAAGRPTINHPTFVGSERCRPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV
FT SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV"
XX
SQ Sequence 1831 BP; 434 A; 431 C; 431 G; 535 T; 0 other;
AJ829775 Length: 1831 April 19, 2005 08:56 Type: N Check: 7050 ..
1 tctgatgatc ttcaaaagat attatttagc cctgaagcca ttaggaaaat
51 ggctactgag tgtgacctag gccggcatca ctggatgcgc gctgataacg
101 ctatttcagt ccggcccctc gttcccgaag taacccatgg tcgtattgct
151 tccttcttta agtctggata tgatgtcggt gaattgtgct ctaaaggata
201 tatgagcgtc cctcaagtgt tgtgtgctgt tactcgaacg gtttctaccg
251 aggctgaggg atctttgaga atttacctgg ctgatttagg cgacaaggag
301 ttatctccta tagatggaca atgcgtatca ttacataacc atgatcttcc
351 cgctttagtg tctttccaac cgacgtatga ctgtcctatg gaaactgttg
401 ggaatcgtaa gcggtgtttt gctgtcgtta tcgaaaggca tggttatatt
451 gggtacaccg gcaccacagc aagcgtgtgt agtaattggc aagcacggtt
501 ttcttctaag aataacaact acactcatat cgctgctggg aagactctag
551 tactgccatt caacagatta gctgagcaaa cgaaaccgtc agccgtagct
601 cgcctgttga agtcgcaatt gaacaacata gaatcttcgc aatacgtttt
651 aacggattcg aagattaatc aaaatgcgcg cagtgagtcc gaggatttaa
701 atgttgagag ccctcccgcc gcaatcggga gttcttccgc gtcccgctcc
751 gaagccttca gaccgcaggt ggttaacggt ctttagcact ttggcgcgta
801 ttagtatata agtatttgtg agtctgtaca taatactata tctatagtgt
851 cctgtgtgag ttgatacagt agacatctgt gacgcgatgc cgtgttgaga
901 agggaacaca tctggtttta gtaagcctac atcatagttt tgaggttcaa
951 ttcctcttac tccctgttga gtcccttact ttctcatgga tgcttctccg
1001 cgagattgcg ttattgtcta ctgactatat agagagtgtg tgtgctgtgt
1051 tttctctttt gtgtcgtaga attgagtcga gtcatggaca aatctgaatc
1101 aaccagtgct ggtcgtaacc gtcgacgtcg tccgcgtcgt ggttcccgct
1151 ccgccccctc ctccgcggat gctaacttta gagtcttgtc gcatcagctt
1201 tcgcgactta ataagacgtt agcagctggt cgtccaacta ttaaccaccc
1251 aacctttgta gggagtgaac gctgtagacc tgggtacacg ttcacatcta
1301 ttaccctaaa gccaccaaaa atagaccgtg ggtcttatta cggtaaaagg
1351 ttgttactac ctgattcagt cacggaatat gataagaagc ttgtttcgcg
1401 cattcaaatt cgagttaatc ctttgccgaa atttgattct accgtgtggg
1451 tgacagtccg taaagttcct gcctcctcgg acttatccgt tgccgccatc
1501 tctgctatgt tcgcggacgg agcctcaccg gtactggttt atcagtatgc
1551 cgcatctgga gtccaagcca acaacaaact gttgtatgat ctttcggcga
1601 tgcgcgctga tataggtgac atgagaaagt acgccgtcct cgtgtattca
1651 aaagacgatg cgctagagac ggacgagcta gtacttcatg ttgacatcga
1701 gcaccaacgc attcccactt ctggagtgct cccagtctga ttccgtgttc
1751 ccagaatcct ccctccgatc tctgtggcgg gagctgagtt ggcagttctg
1801 ctataaactg tctgaagtca ctaaacgttt t