Sequence of DPV Rice stripe virus

Rice stripe virus SP gene for disease specific protein and NSvc4 gene for putative movement protein, isolate FYi04, genomic RNA, complete virus segment

ACC No: AJ875055

Dated: 2005-01-13 | Length: 2237 | CRC: -139071337

                !!NA_SEQUENCE 1.0
ID   AJ875055   standard; genomic RNA; VRL; 2237 BP.
XX
AC   AJ875055;
XX
SV   AJ875055.1
XX
DT   13-JAN-2005 (Rel. 82, Created)
DT   13-JAN-2005 (Rel. 82, Last updated, Version 1)
XX
DE   Rice stripe virus SP gene for disease specific protein and NSvc4 gene for
DE   putative movement protein, isolate FYi04, genomic RNA, complete virus
DE   segment
XX
KW   disease specific protein; movement protein; NSvc4 gene; SP gene.
XX
OS   Rice stripe virus
OC   Viruses; ssRNA negative-strand viruses; Tenuivirus.
XX
RN   [1]
RP   1-2237
RA   Li F.;
RT   ;
RL   Submitted (12-JAN-2005) to the EMBL/GenBank/DDBJ databases.
RL   Li F., Plant pathology, Institute of Plant Virology, Fujian Agriculture and
RL   Forestry University, Fuzhou,350002, Fujian province, CHINA.
XX
RN   [2]
RA   Yang J., Li F., Wu Z., Chen H., Xie L.;
RT   "Genetic diversity of Rice stripe virus in Yunnan";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2237
FT                   /country="China:Yunnan province, Dali Fengyi"
FT                   /db_xref="taxon:12331"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Rice stripe virus"
FT                   /isolate="FYi04"
FT                   /segment="RNA4"
FT   CDS             55. .591
FT                   /gene="SP"
FT                   /product="disease specific protein"
FT                   /protein_id="CAI44198.1"
FT                   /translation="MQDVQRTIEVSVGPIVGLDYTLLYDTLPETVSDNITLPDLKDPER
FT                   VTEDTKKLILKGCVYIAYHHPLETDTLFIKVHKHIPEFCHSFLSHLLGGEDDDNALIDI
FT                   GLFFNILQPSLGGWITKNFLRHPNRMSKDQIKMLLDQIIKMAKAESSDTEEYEKVWKKM
FT                   PTYFESIIQPLLHKT"
FT   CDS             complement(1326. .2186)
FT                   /gene="NSvc4"
FT                   /product="putative movement protein"
FT                   /protein_id="CAI44199.1"
FT                   /translation="MALSRLLSTSKSKVLYDDLSEESQKRVDNKNRKSLALSKRPLNQG
FT                   RVTIDQAATMLGLEPFSFSDVKVNKYDMFIAKQDYSVKAHRKATFNILVDPYWFHQPLT
FT                   HYPFFRVATFAMVWIGIKGRASGITTLRIIDKSYVNPSDQVEVEVRYPISKNFAVLGSL
FT                   ANFLALEDKHNLQVSVSVDDSSVQNCVISRTLWFWGIERTDLPVSMKTSDTVMFEFEPL
FT                   EDKAINHLSSFSKFTTNVVQKAVGGAFTSKSFPELGTEKEFGVVKQPKKIPITKKSKSE
FT                   VSVIM"
XX
SQ   Sequence 2237 BP; 711 A; 461 C; 427 G; 638 T; 0 other;

AJ875055  Length: 2237  January 18, 2005 08:37  Type: N  Check: 9377  ..

       1  acacaaagtc cagggcattt gtgcaacgat ccagcaattt aatcagaatc
      51  gaagatgcaa gacgtacaaa ggacaataga agtttctgtt ggtcctattg
     101  taggcctaga ttacactctg ttgtatgaca ctctgcccga gactgttagc
     151  gataatatta ctctacctga tttgaaagat ccagagagag tcacggaaga
     201  tactaagaag ctaatactca aaggctgtgt ttatatagca tatcatcacc
     251  ccttggagac tgacaccctc ttcattaaag ttcacaaaca tataccagag
     301  ttttgccact cattcctatc acaccttcta ggaggtgaag atgatgacaa
     351  tgctctaata gacattggtc tattcttcaa catcttgcaa ccctctttgg
     401  gaggttggat aactaagaat tttcttagac accctaatag gatgtccaag
     451  gaccaaatta aaatgctcct agatcagatt atcaaaatgg ctaaggctga
     501  gagctcagac acagaagagt atgagaaagt gtggaagaag atgccaactt
     551  attttgaatc aatcattcaa cctcttctac acaaaacata gttcattgca
     601  tatcatgcag tctcacctaa gagtgcttgc aatctagaag tggagccagt
     651  ctggattggc ctactagtat ggaaatataa gtatattata gtctagataa
     701  taacatatat gatgtttgtt tgcttgagtt tgacagtttg taagtaattg
     751  tgtgtgattg tgcgtgtata tatgtgtcaa cttataactg tgcatgggtg
     801  tgtagatgtg aacacttgga ataaacatac acctatcaac ttatatacac
     851  acttgtaagt ccttgttcct ctatatacac acatagaaac atgagagtgt
     901  caagtagcac agtcctggag ctatgagcac agatatagct gtgtgtagag
     951  aacactcaag gccaagaatt ctctaacatc gctttataca aaaaccatta
    1001  taaaaatact aacaactttt ttttcacaat gtcaacgcta aaaactgaaa
    1051  tgccaaaaac atgagaaaat agaaaatcaa aaaataatga atggtgctag
    1101  gcaccacacc cggatgtggt gcgtagcacc attttcatag cattaaccta
    1151  taatctattt gtagcatgaa cacccatatg catgaagtgc atagcactct
    1201  cttatggatt gactactatg actacatgaa tgcatagcat tctcataggg
    1251  aaaaagcaga gcagaacaga ccacatcaag tgcttagcac cagatgttag
    1301  catattccga agctggtcat ctcacctaca tgatgacaga aacttcagat
    1351  tttgatttct tcgtgatggg tatcttcttt ggctgcttca ccacaccgaa
    1401  ctccttttca gtgcctagct cagggaaact cttgctggtg aatgcacctc
    1451  caacagcttt ctgaacaaca ttggttgtga acttactgaa gctagacaaa
    1501  tgatttattg ccttatcttc tagtggttca aattcaaaca tcacagtgtc
    1551  actggtcttc atggacactg gcagatcagt cctttcaatt ccccagaacc
    1601  aaagagttct agagatgaca cagttctgca ctgagctgtc atcaacagac
    1651  acggacacct gaagattatg cttatcctcc aaagccagaa aatttgctag
    1701  agaacccaag acagcaaagt ttttgctaat tgggtagcga acctcaactt
    1751  caacttgatc tgaggggttc acataagact tatctataat gcggagggta
    1801  gtaattccac tggctctacc ctttatccca atccagacca tagcaaaagt
    1851  tgctactctg aaaaatggat aatgggtgag aggttgatga aaccaatatg
    1901  gatcaacaag tatgttgaaa gttgccttcc tatgggcctt cacagaatag
    1951  tcctgtttgg ctatgaacat atcatacttg ttcaccttga catctgagaa
    2001  gctgaagggt tccaatccga gcattgtagc agcctggtca atcgtaaccc
    2051  taccttggtt cagaggcctc ttggagagag ctagagattt cctattctta
    2101  ttatcaactc tcttttgaga ctcctcacta aggtcgtcat agagtacctt
    2151  actttttgaa gtggacaaaa gtcgagacaa agccatgatt aaattatata
    2201  ttagcttaat ctcaaaagat atgccctgac tttgtgt