Sequence of DPV Rice yellow mottle virus

Rice yellow mottle virus mRNA for coat protein (ORF4 gene), isolate CI113

ACC No: AJ885107

Dated: 2005-06-23 | Length: 720 | CRC: -1727326842

                !!NA_SEQUENCE 1.0
ID   AJ885107   standard; mRNA; VRL; 720 BP.
XX
AC   AJ885107;
XX
SV   AJ885107.1
XX
DT   23-JUN-2005 (Rel. 84, Created)
DT   23-JUN-2005 (Rel. 84, Last updated, Version 1)
XX
DE   Rice yellow mottle virus mRNA for coat protein (ORF4 gene), isolate CI113
XX
KW   coat protein; cp gene; ORF4.
XX
OS   Rice yellow mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus.
XX
RN   [1]
RP   1-720
RA   Fargette D.;
RT   ;
RL   Submitted (17-FEB-2005) to the EMBL/GenBank/DDBJ databases.
RL   Fargette D., Dgpc, Ird, BP64501, 34394 Montpellier cedex 5, FRANCE.
XX
RN   [2]
RA   Traore O., Sorho F., Pinel A., Abubakar Z.;
RT   "Processes of diversification and dispersion of Rice yellow mottle virus
RT   inferred from large-scale and high resolution phylogeographic studies";
RL   Mol. Ecol. 0:0-0(0).
XX
RN   [3]
RA   Traore O., Sorho F., Pinel A., Abubakar Z., Banwo O., Maley J., Hebrard E.,
RA   Winter S., Sere Y., Konate G., Fargette D.;
RT   "Processes of diversification and dispersion of Rice yellow mottle virus
RT   inferred from large-scale and high resolution phylogeographic studies";
RL   Mol. Ecol. 14(7):2097-2110(2005).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .720
FT                   /country="Cote d'Ivoire"
FT                   /db_xref="taxon:31744"
FT                   /mol_type="mRNA"
FT                   /virion
FT                   /organism="Rice yellow mottle virus"
FT                   /isolate="CI113"
FT   CDS             1. .720
FT                   /evidence=EXPERIMENTAL
FT                   /note="ORF4"
FT                   /product="coat protein"
FT                   /protein_id="CAI59654.1"
FT                   /translation="MARKGKKTNSNQGQQGKKKSRRPRGRSAEPQLQRAPVAQASRISG
FT                   TVPGPLSSNTWPLHSVEFLADFKRSATSADATTYDCVPFNLPRVWSLARCYSMWKPTRW
FT                   DVVYLPEVSAAAAGSIEMCFLYDYADTIPSDTGKMSRTAGFVTSSVWYGAEGCHLLSGG
FT                   SARNAVVASMDCSRVGWKRVTSSIPSKTDPNVVNTILPARLAVRSSIKPTVDDTPGKLY
FT                   AIVSMVLRDPVDPTLNT"
XX
SQ   Sequence 720 BP; 157 A; 198 C; 212 G; 153 T; 0 other;

  AJ885107  Length: 720  June 28, 2005 08:34  Type: N  Check: 6656  ..

       1  atggccagga agggcaagaa aaccaactcc aaccaggggc agcaaggaaa
      51  gaagaagagt cggcgcccac gtgggcgttc ggcggagcct cagcttcaac
     101  gggctccggt ggctcaggcc tcccggatat ctgggacggt tcctggtcca
     151  ctatcttcta acacctggcc gctccactcc gtggaattcc tagcggattt
     201  taagcggagt gccacctcag cagacgcgac gacatatgat tgtgtgccgt
     251  tcaatctgcc tcgagtgtgg agtcttgcgc gttgttactc catgtggaag
     301  ccaacacggt gggatgtcgt ttacctccct gaggtgagcg cggcggcagc
     351  tggaagtatc gagatgtgtt ttctctacga ctatgctgac accatcccaa
     401  gtgacacggg caagatgagc aggacggcgg gcttcgtcac ctccagcgtt
     451  tggtacggcg cggagggctg ccacttacta agtggcggct cagcacgaaa
     501  tgccgtggtc gcctcgatgg attgctcccg agtcggctgg aaacgtgtta
     551  ctagttccat tcctagtaaa acggatccca acgtcgtaaa caccatactg
     601  ccagctaggc tagctgtgcg gtcgtcgatc aaaccgacgg ttgatgatac
     651  gccggggaaa ctctacgcta tcgtcagtat ggtcctgcgg gatccggttg
     701  atccaacact caatacgtga