Sequence of DPV Rice yellow mottle virus

Rice yellow mottle virus mRNA for coat protein (ORF4 gene), isolate Tz18

ACC No: AJ885159

Dated: 2005-06-23 | Length: 720 | CRC: -1386297475

                !!NA_SEQUENCE 1.0
ID   AJ885159   standard; mRNA; VRL; 720 BP.
XX
AC   AJ885159;
XX
SV   AJ885159.1
XX
DT   23-JUN-2005 (Rel. 84, Created)
DT   23-JUN-2005 (Rel. 84, Last updated, Version 1)
XX
DE   Rice yellow mottle virus mRNA for coat protein (ORF4 gene), isolate Tz18
XX
KW   coat protein; cp gene; ORF4.
XX
OS   Rice yellow mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus.
XX
RN   [1]
RP   1-720
RA   Fargette D.;
RT   ;
RL   Submitted (17-FEB-2005) to the EMBL/GenBank/DDBJ databases.
RL   Fargette D., Dgpc, Ird, BP64501, 34394 Montpellier cedex 5, FRANCE.
XX
RN   [2]
RA   Traore O., Sorho F., Pinel A., Abubakar Z.;
RT   "Processes of diversification and dispersion of Rice yellow mottle virus
RT   inferred from large-scale and high resolution phylogeographic studies";
RL   Mol. Ecol. 0:0-0(0).
XX
RN   [3]
RA   Traore O., Sorho F., Pinel A., Abubakar Z., Banwo O., Maley J., Hebrard E.,
RA   Winter S., Sere Y., Konate G., Fargette D.;
RT   "Processes of diversification and dispersion of Rice yellow mottle virus
RT   inferred from large-scale and high resolution phylogeographic studies";
RL   Mol. Ecol. 14(7):2097-2110(2005).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .720
FT                   /country="Tanzania"
FT                   /db_xref="taxon:31744"
FT                   /mol_type="mRNA"
FT                   /virion
FT                   /organism="Rice yellow mottle virus"
FT                   /isolate="Tz18"
FT   CDS             1. .720
FT                   /evidence=EXPERIMENTAL
FT                   /note="ORF4"
FT                   /product="coat protein"
FT                   /protein_id="CAI59706.1"
FT                   /translation="MARKGKKTNSNQNQQGKKSRRPRGRSAEPRLQRAPVAQASRISGT
FT                   VPGPLSSNVWPINRSVEFLMDFKRSATSTEATILNCVPFNLPRVWSLARCYSLWKPTRW
FT                   DVVYLPEISAAAAGSIEMCYLYDYADTVPSDTGKMSRTAGFVTSSVWYGAEGCHLLTGG
FT                   SARNAVVASMDCSRVDWKRVTSSIPSGVDPNVVNTILPARLAVRSSIKPAVDDTPGKLY
FT                   AIVSMVLRDPVDPTLNT"
XX
SQ   Sequence 720 BP; 164 A; 195 C; 203 G; 158 T; 0 other;

  AJ885159  Length: 720  June 28, 2005 08:34  Type: N  Check: 6085  ..

       1  atggccagga agggcaagaa aaccaactcc aaccaaaatc agcaaggcaa
      51  gaagagccgc cgccctcgtg ggcggtcggc ggaaccccgg cttcaaaggg
     101  ctccagtggc tcaggcctcc cggatatctg ggacggttcc tggaccacta
     151  tcttctaatg tctggccgat taaccgctcc gtggaattct tgatggattt
     201  caagcggagc gccacctcga cagaggcgac catacttaat tgtgtgccgt
     251  tcaatctgcc tcgagtgtgg agtcttgcac gttgctactc cttgtggaag
     301  ccaacaaggt gggacgtcgt ctatctccct gagattagcg cggcagcagc
     351  tggaagtatc gagatgtgtt atctctacga ctacgctgac acagtcccaa
     401  gtgacacggg caagatgagc aggacagcgg gcttcgtcac ctccagcgtt
     451  tggtacggcg cggagggctg ccatttgtta actggcggct cagcacgaaa
     501  tgccgtggtt gcctcgatgg attgttcccg agtcgactgg aaacgcgtta
     551  ctagttcaat ccctagtggc gtggatccca acgttgtaaa caccatactg
     601  ccagctaggc tagctgtgcg gtcgtcgatt aaaccggcgg ttgatgatac
     651  accaggtaaa ctgtacgcta tcgtcagtat ggtcctgcgg gacccagttg
     701  atccaacact caatacgtga