Sequence of DPV Sri Lankan cassava mosaic virus
Sri Lankan cassava mosaic virus - India [India:Kerala C4] ac1 gene, ac2 gene, ac3 gene, ac4 gene, av1 gene and av2 gene, isolate Kerala C4, complete virus segment
ACC No: AJ890226
Dated: 2008-07-23 | Length: 2757 | CRC: -1939950087
ID AJ890226; SV 1; circular; genomic DNA; STD; VRL; 2757 BP.
XX
AC AJ890226;
XX
DT 19-MAR-2005 (Rel. 83, Created)
DT 23-JUL-2008 (Rel. 96, Last updated, Version 6)
XX
DE Sri Lankan cassava mosaic virus - India [India:Kerala C4] ac1 gene, ac2
DE gene, ac3 gene, ac4 gene, av1 gene and av2 gene, isolate Kerala C4,
DE complete virus segment
XX
KW ac1 gene; ac2 gene; ac3 gene; ac4 gene; AC4 protein; av1 gene; av2 gene;
KW AV2 protein; coat protein; replication enhancer;
KW replication-associated protein; transcription activator protein.
XX
OS Sri Lankan cassava mosaic virus - India [India:Kerala C4]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2757
RA Jeske H.;
RT ;
RL Submitted (09-MAR-2005) to the EMBL/GenBank/DDBJ databases.
RL Jeske H., Molecular biology and virology of plants, University of
RL Stuttgart, Pfaffenwaldring 57, Stuttgart, D 70550, GERMANY.
XX
RN [2]
RX DOI; 10.1007/s00705-005-0624-8.
RX PUBMED; 16132175.
RA Rothenstein D., Haible D., Dasgupta I., Dutt N., Patil B.L., Jeske H.;
RT "Biodiversity and recombination of cassava-infecting begomoviruses from
RT southern India";
RL Arch. Virol. 151(1):55-69(2006).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2757
FT /organism="Sri Lankan cassava mosaic virus - India
FT [India:Kerala C4]"
FT /segment="DNA A-like"
FT /isolate="Kerala C4"
FT /mol_type="genomic DNA"
FT /country="India:Kerala, Pulikkal, Malappuram"
FT /isolation_source="Manihot esculenta"
FT /virion
FT /db_xref="taxon:454143"
FT CDS 136. .492
FT /gene="av2"
FT /product="AV2 protein"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q5CAN4"
FT /protein_id="CAI64604.1"
FT /translation="MWDPLVNEFPDSVHGFRCMLAVKYLQLVEGTYSPDTLGYDLIRDL
FT ISVIRAKNYVEATSRYHHFNSRLEGSPPSELRQPIQQSCCCPHCPRHKKTSLDKQAHES
FT EAQVVQDVQKPRCS"
FT CDS 296. .1066
FT /gene="av1"
FT /product="coat protein"
FT /db_xref="GOA:Q5CAN3"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q5CAN3"
FT /protein_id="CAI64605.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYSSRAAVPTVRVTKRQAWT
FT NRPMNRKPRWYRMFKSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR
FT VGKRFCVKSVYILGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFVEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVRN"
FT CDS complement(1063. .1467)
FT /gene="ac3"
FT /product="replication enhancer"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:Q5CAN2"
FT /protein_id="CAI64606.1"
FT /translation="MDSRTGELITAAQAMNGVYIWEVPNPLYFRIIQHDSRPFSMPWDI
FT ITVQIRFNHNLRRALGLHQCWMDFKVWTTLQPPTWRFLRVFKTQILKYLDRVGVISINT
FT VVNAVEHVLYNVIHGTDRVEQSNLIKFNIF"
FT CDS complement(1208. .1615)
FT /gene="ac2"
FT /product="transcription activator protein"
FT /db_xref="GOA:Q5CAN1"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:Q5CAN1"
FT /protein_id="CAI64607.1"
FT /translation="MRPSSPSASRSTQVPIKVQHRAAKRKAIRRRRVDLNCGCSYYVHI
FT NCHNHGFTHRGTHHCSSGDEWRLYLGGSKSPLFQDHPARQPTVQHAVGHNNRPDTVQPQ
FT PEESVGTTPMLDGFQGLDDLTASDLAFLEGI"
FT CDS complement(1545. .2600)
FT /gene="ac1"
FT /product="replication-associated protein"
FT /db_xref="GOA:Q5CAN0"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q5CAN0"
FT /protein_id="CAI64608.1"
FT /translation="MRDPRFGIRSKNMFLTYPKCSLTKEHLLEFFRGLSLPTNIKFIKI
FT CRELHQNGEPHLHALLQFEGRLTITNNRQFDCVHPSSSTSFHPDIQSAKSSSDVKSYID
FT KDGDTIDWGEFQIDGRSARGGQQTANDAYAAALNTGSKPEALRVIKELAPKDYVLQFHN
FT LNANLDRIFTPPPEVYVSPFPASSFDQVPDELEEWVSENVMGASARPLRPNSIVIEGDS
FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQ
FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEAKNSALKIWALKNATFISLSEPLY
FT SGSNQGPTQGS"
FT CDS complement(2144. .2446)
FT /gene="ac4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:Q5CAM9"
FT /protein_id="CAI64609.1"
FT /translation="MGNLTSMLCFSSKGGSQSQTIGNSIVYTQAVAPVSTPTYRALSPA
FT PTSSPTSTRMETPSTGVSFRSMEDLQEGDSRQQTTLTPQHLTQAVSQRLLESLRS"
XX
SQ Sequence 2757 BP; 688 A; 631 C; 664 G; 774 T; 0 other;
aj890226 Length: 2757 23-JUL-2008 Type: N Check: 5829 ..
1 accggatggc cgcgcccccc gctttgtggt ggaccccccc cacgtggaga
51 tgtcccccac tcagaacgct ctctcaaagc ctgtatagtt gtggtccccc
101 tttaagtact tgctcagcaa gttgtaatct gcacaatgtg ggaccctttg
151 gtaaacgagt tccctgattc agttcacggt ttccggtgta tgctcgccgt
201 gaaatacctt cagctggttg aaggtactta ttcccccgat acactcggtt
251 acgatttaat cagagatttg atctctgtca tcagggccaa aaattatgtc
301 gaagcgacca gcagatatca tcatttcaac tcccgcctcg aaggttcgcc
351 gccgtctgaa cttcgacagc ccatacagca gtcgtgctgc tgtccccact
401 gtccgcgtca caaaaagaca agcctggaca aacaggccca tgaatcggaa
451 gcccaggtgg tacaggatgt tcaaaagccc agatgttcct aggggatgtg
501 aaggcccatg taaggtccag tcattcgagt ccagacacga tgtggtccat
551 ataggtaagg tcatgtgcat ctctgatgtc actcgtggag ttgggcttac
601 tcatcgcgtg ggtaagaggt tttgcgttaa gtccgtttac atcctgggca
651 agatatggat ggatgaaaac attaagacca agaatcacac gaatagtgtg
701 atgttcttcc ttgtaaggga tcgtaggcct gttgataagc cccaggattt
751 tgttgaagtg tttaatatgt tcgataatga gcccagtaca gctacggtga
801 agaacatgca tcgtgatcgc tatcaagtcc tcaggaagtg gagtgccact
851 gtcactggtg gtcagtatgc gagcaaggag caggctttag ttaggcgttt
901 ctttagggtt aataattatg ttgtgtataa ccagcaagag gctgggaaat
951 atgagaacca tactgagaat gcattaatgt tgtacatggc gtgtactcat
1001 gcctctaatc ctgtatacgc tacgttgaag attagaatct acttctatga
1051 ttcagtgaga aattaaaaaa tattaaattt tattaaatta gactgctcaa
1101 cacggtcagt cccatggatt acattgtaca atacatgctc tacggcgttt
1151 acaacagtat taatacttat aactcctacg cgatctaagt atttcaatat
1201 ttgggtctta aataccctca agaaacgcca ggtcggaggc tgtaaggtcg
1251 tccagacctt gaaatccatc cagcattggt gtagtcccaa cgctctcctc
1301 aggttgtggt tgaaccgtat ctggacggtt attatgtccc acggcatgct
1351 gaacggtcgg ctgtcgtgct ggatgatcct gaaatagagg ggatttggaa
1401 cctcccagat atagacgcca ttcatcgcct gagctgcagt gatgagttcc
1451 cctgtgcgtg aatccatggt tgtggcagtt tatgtgcacg tagtacgagc
1501 acccgcagtt gaggtctacc ctccgtcgcc ggatggcctt acgcttagct
1551 gccctgtgtt ggaccttgat tggaacctga gtagagcggc tcgctgaggg
1601 agatgaaggt cgcattcttc agagcccaaa tcttcaatgc gctattcttc
1651 gcctcgtcaa ggaattcttt atagctggaa ttgggcccag gattgcacag
1701 gaagatagtg gggattcccc ctttaatttg aactggtttc ccgtacttgg
1751 tgtttgactg ccagtccctt tgggccccca tgaattcctt aaagtgcttt
1801 agataatgcg gatctacgtc atcaatgacg ttgtaccatg catcattgct
1851 gtaaacccta ggactcaagt ccagatgtcc acatagatag ttgtgtggac
1901 ctaatgacct agcccacatt gttttgcctg tacgactatc gccctcgatg
1951 actatactat taggtctcaa aggcctcgca gaggcaccca tgacattctc
2001 tgacacccac tcctcaagtt catctggaac ttggtcaaat gaagaggctg
2051 ggaagggaga cacatatacc tcgggaggag gtgtaaaaat cctatctaaa
2101 ttagcattta gattatgaaa ttgtaaaaca taatccttgg gtgctaactc
2151 cttaatgact ctaagagcct ctggcttact gcctgtgtta agtgctgcgg
2201 cgtaagcgtc gtttgctgtc tgctgtcccc ctcttgcaga tcttccatcg
2251 atctgaaact caccccagtc gatggtgtct ccatccttgt cgatgtagga
2301 cttgacgtcg gagctggact tagcgctctg tatgtcgggg tggaaactgg
2351 tgctactgct tgggtgtaca caatcgaatt gccgattgtt tgtgattgtg
2401 agcctccctt cgaactgaag cagagcatgg aggtgaggtt ccccattctg
2451 atggagttct ctgcaaattt taataaattt gatgtttgtc ggaagactca
2501 agccccggaa gaactcgagt aagtgttctt tggtgagaga acacttaggg
2551 tatgtgagga acatattttt ggaccgaatt ccgaatcgcg ggtctctcat
2601 ctttgactgg gtcaattgga gacacccctg agcaagtctc tagtgaattg
2651 gagacaatat atatgtgtct ccaaatggca ttcttgtaat tctcaaaagt
2701 tacagtcaaa tttcaaattc gaatttgata tccaaaagcg gccatccgta
2751 taatatt