Sequence of DPV Pepino mosaic virus
Pepino mosaic virus TGBp2 gene (partial), TGBp3 gene and CP gene (partial), genomic RNA, isolate Mu 04.12
ACC No: AM040187
Dated: 2005-10-20 | Length: 984 | CRC: 1679836993
!!NA_SEQUENCE 1.0
ID AM040187 standard; genomic RNA; VRL; 984 BP.
XX
AC AM040187;
XX
SV AM040187.1
XX
DT 20-OCT-2005 (Rel. 85, Created)
DT 20-OCT-2005 (Rel. 85, Last updated, Version 1)
XX
DE Pepino mosaic virus TGBp2 gene (partial), TGBp3 gene and CP gene (partial),
DE genomic RNA, isolate Mu 04.12
XX
KW coat protein; CP gene; TGBp2 gene; TGBp3 gene; triple gene block protein 2;
KW triple gene block protein 3.
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus.
XX
RN [1]
RP 1-984
RA Pagan I.;
RT ;
RL Submitted (20-JUN-2005) to the EMBL/GenBank/DDBJ databases.
RL Pagan I., Biotecnologia, E.T.S. Ingenieros Agronomos, Ciudad Universitaria,
RL Madrid, 28040, SPAIN.
XX
RN [2]
RA Pagan I., Cordoba-Selles M., Martinez-Priego L., Fraile A., Malpica J.M.,
RA Jorda C., Garcia-Arenal F.;
RT "Genetic structure of the population of Pepino mosaic virus infecting
RT tomato crops in Spain";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .984
FT /country="Spain:Murcia"
FT /db_xref="taxon:112229"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Pepino mosaic virus"
FT /isolate="Mu 04.12"
FT /specific_host="Lycopersicon esculentum"
FT CDS <1. .354
FT /codon_start=1
FT /gene="TGBp2"
FT /product="triple gene block protein 2"
FT /protein_id="CAJ04705.1"
FT /translation="RTDLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRLPFGGQY
FT QDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFRFSISRNTHQHHCYNTH
FT SATQTGQSVPGHH"
FT CDS 206. .454
FT /gene="TGBp3"
FT /product="triple gene block protein 3"
FT /protein_id="CAJ04706.1"
FT /translation="MSSYLSSFLHWVLSSPINFVLALAVILTSIIATTHILQPKQVNQC
FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT CDS 500. .>984
FT /gene="CP"
FT /product="coat protein"
FT /protein_id="CAJ04707.1"
FT /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAA"
XX
SQ Sequence 984 BP; 287 A; 251 C; 168 G; 278 T; 0 other;
AM040187 Length: 984 November 1, 2005 08:46 Type: N Check: 9779 ..
1 agaactgatc ttactgacac gtataaaatc attgctatag cctttctact
51 gtcagcttgc atttacttcc aaaacagtca ttatcaacca gttgcaggtg
101 ataatttgca cagactaccc tttggtggtc agtatcaaga cggaactaag
151 aagatttctt actttccgca gcaacaatcc tactttcact caggaaacaa
201 gcttaatgtc ctcatactta tcttcattct tacactgggt attgtcctca
251 ccaataaatt tcgttttagc attagccgta atactcacca gcatcattgc
301 tacaacacac attctgcaac ccaaacaggt caatcagtgc caggtcatca
351 ttgacggtgc agccatagtt ataacaaatt gtccaaacac acccgaagtt
401 cttaaagcaa tcaacttctc cccttggaac gggttaagtt ttcctcaatt
451 gtgaaatcat atttgttatc tagttaaatt caaacaattt aactcaacta
501 tggaaaacca acctacagct tctaacccat cagatgtacc accaactgct
551 gctcaagctg gtgcccagag cccagccgac ttctcaaatc ctaatacagc
601 tccttcccta agtgatttga agaagatcaa atacgtgtca actgtcactt
651 cagttgccac gcctgctgaa attgaggccc ttggcaagat ctttactgcc
701 atgggtttag cagccaatga gaccggacct gccatgtggg acctcgctcg
751 tgcttatgct gatgtgcaaa gttcaaaatc tgcacaactt ataggtgcca
801 caccatccaa ccctgctttg tctagacgtg cacttgctgc acagtttgat
851 cgtatcaata tcacacccag acaattctgc atgtattttg caaaaattgt
901 ttggaacata ctgttagaca gcaatgtgcc acctgccaac tgggcaaaat
951 tgggctatca ggaagatacc aagtttgctg cttg