Sequence of DPV Cucumber mosaic virus

Cucumber mosaic virus CP gene for coat protein, genomic RNA

ACC No: AM040193

Dated: 2005-06-21 | Length: 944 | CRC: -566212818

                !!NA_SEQUENCE 1.0
ID   AM040193   standard; genomic RNA; VRL; 944 BP.
XX
AC   AM040193;
XX
SV   AM040193.1
XX
DT   21-JUN-2005 (Rel. 84, Created)
DT   21-JUN-2005 (Rel. 84, Last updated, Version 1)
XX
DE   Cucumber mosaic virus CP gene for coat protein, genomic RNA
XX
KW   coat protein; CP gene.
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Cucumovirus.
XX
RN   [1]
RP   1-944
RA   Mahinghara B.K.;
RT   ;
RL   Submitted (20-JUN-2005) to the EMBL/GenBank/DDBJ databases.
RL   Mahinghara B.K., Plant Virus Lab, Floriculture Division, Institute of
RL   Himalayan Bioresource Tech., P.O. Box 6, Palampur, Himachal Pradesh, 176
RL   061, INDIA.
XX
RN   [2]
RA   Mahinghara B.K., Hallan V.K., Zaidi A.A.;
RT   "Variability in the genome of Cucumber mosaic virus infecting Lilium
RT   longiflorum in India.";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .944
FT                   /country="India:Himachal pradesh"
FT                   /db_xref="taxon:12305"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Cucumber mosaic virus"
FT                   /specific_host="Lilium longiflorum"
FT   misc_feature    <1. .151
FT                   /note="intercistronic region"
FT   CDS             152. .808
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="CAJ02309.1"
FT                   /translation="MDKSGSTSAGRSRRRRPRRGSRSAPSSADANFRVLSQHLSRLNKT
FT                   LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDVEHQRIPTSGVLPT"
FT   3'UTR           809. .>944
XX
SQ   Sequence 944 BP; 211 A; 235 C; 219 G; 279 T; 0 other;

  AM040193  Length: 944  June 28, 2005 08:34  Type: N  Check: 514  ..

       1  tagcttttag gttcaattcc ttcctcttgc tccctgttgg gatccttact
      51  ttctcatgga tgcttctccg cgagattgcg ttattgtcta ctgactatat
     101  agagagtttg tgctgtgttt tctcttttgt gtcgtagaat tgagtcgagt
     151  catggacaaa tctggatcaa ccagtgccgg tcgtagccgt cgacgtcgtc
     201  cgcgtcgtgg ttcccgctcc gccccctcct ccgcggatgc taactttaga
     251  gtcttgtcgc agcatctttc gcgacttaat aagacgttag cagctggtcg
     301  tccaactatt aaccacccaa cctttgtagg gagtgaacgc tgtaaacctg
     351  ggtacacgtt cacatctatc accctaaagc caccaaaaat agaccgaggg
     401  tcttattatg gtaaaaggtt gttattacct gattcagtca cggaatatga
     451  taagaaactt gtttcgcgca ttcaaattcg agttaatcct ttgccgaaat
     501  ttgattcaac cgtgtgggtg acagtccgta aagttcctgc ctcctcggac
     551  ttatccgttg ccgccatctc tgctatgttt gcggacggag cctcaccggt
     601  actggtttat cagtacgctg catctggagt ccaagctaac aacaaactgt
     651  tgtatgatct ttcggcgatg cgcgctgata taggcgacat gagaaagtac
     701  gccgtcctcg tgtattcaaa agacgatgca ctcgagacag acgagttagt
     751  acttcatgtt gacgtcgagc accaacgtat tcccacatcc ggagtgctcc
     801  cgacttagtt ccgtgttccc aggaccctcc ctccattttt ggtgggagct
     851  gagttggcag tattgctaca aactgtctga agtcgttaaa tcagtgtgtc
     901  attgtacaca ttatggcgaa cgggttctga ctggtaaaat cggc