Sequence of DPV Pepino mosaic virus
Pepino mosaic virus TGBp1, TGBp2 and TGBp3 genes, genomic RNA, strain US2, isolate Mu 04.8US
ACC No: AM042007
Dated: 2005-11-04 | Length: 1272 | CRC: -1947109556
!!NA_SEQUENCE 1.0
ID AM042007 standard; genomic RNA; VRL; 1272 BP.
XX
AC AM042007;
XX
SV AM042007.1
XX
DT 04-NOV-2005 (Rel. 85, Created)
DT 04-NOV-2005 (Rel. 85, Last updated, Version 1)
XX
DE Pepino mosaic virus TGBp1, TGBp2 and TGBp3 genes, genomic RNA, strain US2,
DE isolate Mu 04.8US
XX
KW complete genome; TGBp1 gene; TGBp2 gene; TGBp3 gene;
KW triple gene block protein 1; triple gene block protein 2;
KW triple gene block protein 3.
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus.
XX
RN [1]
RP 1-1272
RA Pagan I.;
RT ;
RL Submitted (04-JUL-2005) to the EMBL/GenBank/DDBJ databases.
RL Pagan I., Biotecnologia, E.T.S. Ingenieros Agronomos, Ciudad Universitaria,
RL Madrid, 28040, SPAIN.
XX
RN [2]
RA Pagan I., Cordoba-Selles M., Martinez-Priego L., Fraile A., Malpica J.M.,
RA Jorda C., Garcia-Arenal F.;
RT "Genetic structure of the population of Pepino mosaic virus infecting
RT tomato crops in Spain";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .1272
FT /country="Spain:Murcia"
FT /db_xref="taxon:112229"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Pepino mosaic virus"
FT /isolate="Mu 04.8US"
FT /specific_host="Lycopersicon esculentum (tomato)"
FT /strain="US2"
FT CDS 71. .775
FT /gene="TGBp1"
FT /product="triple gene block protein 1"
FT /protein_id="CAJ17459.1"
FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT LTIGELNARSDP"
FT CDS 756. .1127
FT /gene="TGBp2"
FT /product="triple gene block protein 2"
FT /protein_id="CAJ17460.1"
FT /translation="MPGLTPRTDLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFRFSISRNTHQH
FT HCYNTHSATQTGQSVPGHH"
FT CDS 979. .1227
FT /gene="TGBp3"
FT /product="triple gene block protein 3"
FT /protein_id="CAJ17461.1"
FT /translation="MSSYLSSFLHWVLSSPINFVLALAVILTSIIATTHILQPKQVNQC
FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
XX
SQ Sequence 1272 BP; 388 A; 294 C; 211 G; 379 T; 0 other;
AM042007 Length: 1272 November 8, 2005 08:44 Type: N Check: 194 ..
1 cagcaggcgt cttggggaga aagtccacca agatcaaccc attaaggggt
51 taagttttcc ccagtttgaa atggaaagat caactttgat caatttactt
101 ctgttacaca aatttgaaca caagattaac actgaaggaa tcattgttgt
151 gcacggaatt gctggaactg ggaaaaccac attgcttagg actttatttt
201 ctgcataccc tagcttagtt ataggttcac ctaggccttg ttacttagat
251 aaagctaata aaatttcaca agtttgcctt tcttgttttc caaatacctt
301 gtgtgacatt gtcgacgagt accatctctt agaaagtttt cctgaaccaa
351 aactagccat ttttggtgac ccctgtcagt gcacttacat tgaaaggttg
401 agaacaccca actacacatc cttcagaaca caccgatttg gcaaatccac
451 tgctgctcta ctaaacaagt tatttgatct taacattgag tcagtcaaag
501 cacaagacga cacagtagaa tactttgatc ctttcgcagt ggacccctct
551 gaacacattt ctgcttcaga aaaagaagtt ttggaatttg taggtgatca
601 agttgagact acaagctctg aagaactagc tggtctcgag tttagtgaag
651 ttactttcta ctgtaccaca cttgctgggg ctgttcaaga aaatcctgcc
701 aaaaccttca tttcactcac tagacacact tcaaagctca caattggtga
751 actaaatgcc aggtctgacc cctagaactg atcttactga cacgtataaa
801 atcattgcta tagcctttct actgtcagct tgcatttact tccaaaacag
851 tcattatcaa ccagttgcag gtgataattt gcacagacta ccctttggtg
901 gtcagtatca agacggaact aagaagattt cttactttcc gcagcaacaa
951 tcctactttc actcaggaaa caagcttaat gtcctcatac ttatcttcat
1001 tcttacactg ggtattgtcc tcaccaataa atttcgtttt agcattagcc
1051 gtaatactca ccagcatcat tgctacaaca cacattctgc aacccaaaca
1101 ggtcaatcag tgccaggtca tcattgacgg tgcagccata gttataacaa
1151 attgtccaaa cacacccgaa gttcttaaag caatcaactt ctccccttgg
1201 aacgggttaa gttttcctca attgtgaaat catatttgtt atctagttaa
1251 attcaaacaa tttacatcaa ct