Sequence of DPV Pepino mosaic virus
Pepino mosaic virus TGBp1, TGBp2 and TGBp3 genes, genomic RNA, strain US2, isolate Mu 04.12US
ACC No: AM042010
Dated: 2005-11-04 | Length: 1260 | CRC: -654781844
!!NA_SEQUENCE 1.0
ID AM042010 standard; genomic RNA; VRL; 1260 BP.
XX
AC AM042010;
XX
SV AM042010.1
XX
DT 04-NOV-2005 (Rel. 85, Created)
DT 04-NOV-2005 (Rel. 85, Last updated, Version 1)
XX
DE Pepino mosaic virus TGBp1, TGBp2 and TGBp3 genes, genomic RNA, strain US2,
DE isolate Mu 04.12US
XX
KW complete genome; TGBp1 gene; TGBp2 gene; TGBp3 gene;
KW triple gene block protein 1; triple gene block protein 2;
KW triple gene block protein 3.
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus.
XX
RN [1]
RP 1-1260
RA Pagan I.;
RT ;
RL Submitted (04-JUL-2005) to the EMBL/GenBank/DDBJ databases.
RL Pagan I., Biotecnologia, E.T.S. Ingenieros Agronomos, Ciudad Universitaria,
RL Madrid, 28040, SPAIN.
XX
RN [2]
RA Pagan I., Cordoba-Selles M., Martinez-Priego L., Fraile A., Malpica J.M.,
RA Jorda C., Garcia-Arenal F.;
RT "Genetic structure of the population of Pepino mosaic virus infecting
RT tomato crops in Spain";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .1260
FT /country="Spain:Murcia"
FT /db_xref="taxon:112229"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Pepino mosaic virus"
FT /isolate="Mu 04.12US"
FT /specific_host="Lycopersicon esculentum (tomato)"
FT /strain="US2"
FT CDS 60. .764
FT /gene="TGBp1"
FT /product="triple gene block protein 1"
FT /protein_id="CAJ17468.1"
FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT LTIGELNARSDS"
FT CDS 745. .1116
FT /gene="TGBp2"
FT /product="triple gene block protein 2"
FT /protein_id="CAJ17469.1"
FT /translation="MPGLTPRTDLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFRFSISRNTHQH
FT HCYNTHSATQTGQSVPGHH"
FT CDS 968. .1216
FT /gene="TGBp3"
FT /product="triple gene block protein 3"
FT /protein_id="CAJ17470.1"
FT /translation="MSSYLSSFLHWVLSSPINFVLALAVILTSIIATTHILQPKQVNQC
FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
XX
SQ Sequence 1260 BP; 385 A; 292 C; 206 G; 377 T; 0 other;
AM042010 Length: 1260 November 8, 2005 08:44 Type: N Check: 3125 ..
1 cttgggagaa gagtccccca agatcaaccc attaaggggt taagtttccc
51 cagtttgaaa tggaaagatc aactttgatc aatttacttc tgttacacaa
101 atttgaacac aagattaaca ctgaaggaat cattgttgtg cacggaattg
151 ctggaactgg gaaaaccaca ttgcttagga ctttattttc tgcataccct
201 agcttagtta taggttcacc taggccttgt tacttagata aagctaataa
251 aatttcacaa gtttgccttt cttgttttcc aaataccttg tgtgacattg
301 tcgacgagta ccatctctta gaaagttttc ctgaaccaaa actagccatt
351 tttggtgacc cctgtcagtg cacttacatt gaaaggttga gaacacccaa
401 ctacacatcc ttcagaacac accgatttgg caaatccact gctgctctac
451 taaacaagtt atttgatctt aacattgagt cagtcaaagc acaagacgac
501 acagtagaat actttgatcc tttcgcagtg gacccctctg aacacatttc
551 tgcttcagaa aaagaagttt tggaatttgt aggtgatcaa gttgagacta
601 caagctctga agaactagct ggtctcgagt ttagtgaagt tactttctac
651 tgtaccacac ttgctggtgc tgttcaagaa aatcctgcca aaaccttcat
701 ttcactcact agacacactt caaagctcac aattggtgaa ctaaatgcca
751 ggtctgactc ctagaactga tcttactgac acgtataaaa tcattgctat
801 agcctttcta ctgtcagctt gcatttactt ccaaaacagt cattatcaac
851 cagttgcagg tgataatttg cacagactac cctttggtgg tcagtatcaa
901 gacggaacta agaagatttc ttactttccg cagcaacaat cctactttca
951 ctcaggaaac aagcttaatg tcctcatact tatcttcatt cttacactgg
1001 gtattgtcct caccaataaa tttcgtttta gcattagccg taatactcac
1051 cagcatcatt gctacaacac acattctgca acccaaacag gtcaatcagt
1101 gccaggtcat cattgacggt gcagccatag ttataacaaa ttgtccaaac
1151 acacccgaag ttcttaaagc aatcaacttc tccccttgga acgggttaag
1201 ttttcctcaa ttgtgaaatc atatttgtta tctagttaaa ttcaaacaat
1251 taacctcaac