Sequence of DPV Pepino mosaic virus
Pepino mosaic virus TGBp1, TGBp2 and TGBp3 genes, genomic RNA, strain US2, isolate Mu 04.18US
ACC No: AM042012
Dated: 2005-11-04 | Length: 1261 | CRC: 79270876
!!NA_SEQUENCE 1.0
ID AM042012 standard; genomic RNA; VRL; 1261 BP.
XX
AC AM042012;
XX
SV AM042012.1
XX
DT 04-NOV-2005 (Rel. 85, Created)
DT 04-NOV-2005 (Rel. 85, Last updated, Version 1)
XX
DE Pepino mosaic virus TGBp1, TGBp2 and TGBp3 genes, genomic RNA, strain US2,
DE isolate Mu 04.18US
XX
KW complete genome; TGBp1 gene; TGBp2 gene; TGBp3 gene;
KW triple gene block protein 1; triple gene block protein 2;
KW triple gene block protein 3.
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus.
XX
RN [1]
RP 1-1261
RA Pagan I.;
RT ;
RL Submitted (04-JUL-2005) to the EMBL/GenBank/DDBJ databases.
RL Pagan I., Biotecnologia, E.T.S. Ingenieros Agronomos, Ciudad Universitaria,
RL Madrid, 28040, SPAIN.
XX
RN [2]
RA Pagan I., Cordoba-Selles M., Martinez-Priego L., Fraile A., Malpica J.M.,
RA Jorda C., Garcia-Arenal F.;
RT "Genetic structure of the population of Pepino mosaic virus infecting
RT tomato crops in Spain";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .1261
FT /country="Spain:Murcia"
FT /db_xref="taxon:112229"
FT /mol_type="genomic RNA"
FT /virion
FT /organism="Pepino mosaic virus"
FT /isolate="Mu 04.18US"
FT /specific_host="Lycopersicon esculentum (tomato)"
FT /strain="US2"
FT CDS 60. .764
FT /gene="TGBp1"
FT /product="triple gene block protein 1"
FT /protein_id="CAJ17474.1"
FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT SASEKEVLEFAGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT LTIGELNARSDS"
FT CDS 745. .1116
FT /gene="TGBp2"
FT /product="triple gene block protein 2"
FT /protein_id="CAJ17475.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT HCYNTHSATQTGQSVPGHH"
FT CDS 968. .1216
FT /gene="TGBp3"
FT /product="triple gene block protein 3"
FT /protein_id="CAJ17476.1"
FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
XX
SQ Sequence 1261 BP; 385 A; 291 C; 207 G; 378 T; 0 other;
AM042012 Length: 1261 November 8, 2005 08:44 Type: N Check: 3877 ..
1 cttgggagta aagtccacca agatcaaccc attaaggggt taagtttccc
51 cagtttgaaa tggaaagatc aactttgatc aatttacttc tgttacacaa
101 atttgaacac aagattaaca ctgaaggaat cattgttgtg cacggaattg
151 ctggaactgg gaaaaccaca ttgcttagga ctttattttc tgcgtaccct
201 agcttagtta taggttcacc taggccttgt tacttagata aagctaataa
251 aatttcacaa gtttgccttt cttgttttcc aaataccttg tgtgacattg
301 ttgacgagta ccatctctta gaaagttttc ctgaaccaaa actagccatt
351 tttggtgacc cctgtcagtg cacttacatt gaaaggttga gaacacccaa
401 ctacacatcc ttcagaacac accgatttgg caaatccact gctgctctac
451 taaacaagtt atttgatctt aacattgagt cagtcaaagc acaagacgac
501 acagtagaat actttgatcc tttcgcagtg gacccctctg aacacatttc
551 tgcttcagaa aaagaagttt tggaatttgc aggtgatcaa gttgagacta
601 caagctctga agaactagct ggtctcgagt ttagtgaagt tactttctac
651 tgtaccacac ttgctggtgc tgttcaagaa aatcctgcca aaaccttcat
701 ttcactcact agacacactt caaagctcac aattggtgaa ctaaatgcca
751 ggtctgactc ctagagctga tcttactgac acgtataaaa tcattgctat
801 agcctttcta ctgtcagctt gcatttactt ccaaaacagt cattatcaac
851 cagttgcagg tgataacttg cacagactac cctttggtgg tcagtatcaa
901 gacggaacta agaagatttc ttactttccg cagcaacaat cctactttca
951 ctcaggaaac aagcttaatg tcctcatact tatcttcatt cttacactgg
1001 gtattgtcct caccaataaa tttagtttta gcattagccg taatactcac
1051 cagcatcatt gctacaacac acattctgca acccaaacag gtcaatcagt
1101 gccaggtcat cattgacggt gcagccatag ttataacaaa ttgtccaaac
1151 acacccgaag ttcttaaagc aatcaacttc tccccttgga acgggttaag
1201 ttttcctcaa ttgtgaaatc atatttgtta tctagttaaa ttcaaacaat
1251 taacctcaac t