Sequence of DPV Cucumber mosaic virus

Cucumber mosaic virus 3a gene and CP gene for coat protein, genomic RNA, isolate VN-Caobang

ACC No: AM048830

Dated: 2007-01-08 | Length: 1908 | CRC: -1876573911

                ID   AM048830; SV 1; linear; genomic RNA; STD; VRL; 1908 BP.
XX
AC   AM048830;
XX
DT   08-JAN-2007 (Rel. 90, Created)
DT   08-JAN-2007 (Rel. 90, Last updated, Version 1)
XX
DE   Cucumber mosaic virus 3a gene and CP gene for coat protein, genomic RNA,
DE   isolate VN-Caobang
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KW   3a gene; 3a protein; coat protein; CP gene.
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Cucumovirus.
XX
RN   [1]
RP   1-1908
RA   Chu H.H.;
RT   ;
RL   Submitted (08-JUL-2005) to the EMBL/GenBank/DDBJ databases.
RL   Chu H.H., Plant Cell Technology, Institute of Biotechnology (IBT), VAST,
RL   Hoang Quoc Viet Str. 18, Cau Giay, Hanoi, 10000, VIET NAM.
XX
RN   [2]
RA   Chu H.H., Nguyen H.M., Pham V.T., Nghiem M.N., Tran K.D., Tran V.T.,
RA   Le B.T.;
RT   "Genetic diversity among Vietnam isolates of Cucumber mosaic virus";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1908
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /specific_host="Nicotiana tabaccum"
FT                   /isolate="VN-Caobang"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Cao Bang province"
FT                   /db_xref="taxon:12305"
FT   CDS             3. .842
FT                   /gene="3a"
FT                   /product="3a protein"
FT                   /protein_id="CAJ15157.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDELQKILFSPEAIKKMAAECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIVSFFKSGYDAGELCSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDKQCVTLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNMGSSQYVLTDSKINQNARSESEELNVESPPVAIGSSSASRFESFRPQVVNGL"
FT   CDS             1137. .1793
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="CAJ15158.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSASSSADANFRVLSQQLSRLNRT
FT                   LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEFDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV"
XX
SQ   Sequence 1908 BP; 437 A; 457 C; 456 G; 558 T; 0 other;

am048830 Length: 1908  08-JAN-2007  Type: N  Check: 1607  ..

       1  gcatggcttt ccaaggtacc agcaggactt taacccaaca gtcctcagcg
      51  gctacgtctg acgaacttca aaagatatta tttagccctg aagccattaa
     101  gaaaatggct gctgagtgtg acctaggccg gcatcattgg atgcgcgctg
     151  ataatgctat ttcagtccgg cccctcgttc ccgaagtaac ccacggtcgt
     201  attgtttcct tctttaagtc tggatatgat gctggtgaac tgtgctctaa
     251  aggatacatg agcgtccctc aggtgttgtg tgctgttact cgaacagttt
     301  ctaccgatgc tgaagggtcc ttgagaattt acctagctga tttaggcgat
     351  aaggagttat ctcccataga taaacaatgc gttacattac ataaccatga
     401  tcttcccgct ttagtgtctt tccaaccgac gtatgattgt cctatggaga
     451  cagttgggaa tcggaagcgg tgttttgctg tcgttatcga aagacatggt
     501  tatattgggt ataccggcac cacagctagc gtgtgtagta attggcaagc
     551  acggttctct tctaagaaca acaactacac tcacatcgca gctgggaaga
     601  ctctagtact gccattcaac agattagctg agcagacgaa accgtcagcc
     651  gtcgctcgcc tgttgaagtc gcaattgaat aatatgggat cttcgcaata
     701  cgttttgacg gattcgaaga ttaatcaaaa tgcgcgcagt gagtccgagg
     751  aattgaatgt tgagagccct cctgtcgcaa tcgggagttc ttccgcgtcc
     801  cgcttcgaat cctttagacc gcaggtggtt aacggtcttt agtgctttcg
     851  ttgcgtatta gtttaagtat atgtctgttt gtacatatta ctataactat
     901  agtgtcctgt gtgggttgat acagtagaca actgtgacgc gatgtcgtgt
     951  tgagaaggga acacatctgg ttctagtaag ccacatcatt agttttgagg
    1001  ttcaattcct cttactccct gttgtgcccc ttactttttc atggatgctt
    1051  ctccacgaaa ttgcgtttcg tctactagat ctttgagagt ctgtgttgtg
    1101  ttttctcttt gtgtcgtaga tttatcgagt cgagtcatgg acaaatccga
    1151  atcaaccagt gctggtcgta accggcgacg tcgtccgcgt cgtggttccc
    1201  gctccgcttc ctcctccgcg gatgccaact ttagagtcct gtcgcaacaa
    1251  ctttcgcgac ttaacaggac gttggcggct ggtcgtccta ctattaacca
    1301  cccaaccttt gtagggagtg aacgctgtaa acctgggtat acgttcacgt
    1351  ctattaccct gaagccaccg aaaatagacc gcgggtctta ttatggtaaa
    1401  aggttgttgc tacctgattc ggtcacggaa ttcgataaga aacttgtttc
    1451  gcgcattcaa attcgagtta atcctctgcc gaaatttgat tctaccgtgt
    1501  gggtgacagt ccgtaaagtt cctgcctcct cggacttgtc cgttgccgcc
    1551  atctctgcta tgttcgcgga cggagcctca ccggtactgg tttatcagta
    1601  tgctgcatcc ggagtccaag ccaacaacaa attgttgtat gatctttcgg
    1651  cgatgcgcgc tgatattggt gacatgcgaa agtacgccgt gctcgtgtat
    1701  tcaaaagacg atgccctcga gacggatgag ttagtacttc atgtcgacat
    1751  cgagcaccaa cgtattccca catctggggt gctcccagtt tgaatccgtg
    1801  tttcccagga ccctccctcc ttcggcggga gctgagttgg cagttttgct
    1851  ctaaactgtc tgaagtcact aaacgtttta cggtgaacgg gttgtccatc
    1901  cagcttac