Sequence of DPV Cucumber mosaic virus

Cucumber mosaic virus 3a gene and CP gene for coat protein, genomic RNA, isolate VN-Bavi

ACC No: AM048831

Dated: 2007-01-08 | Length: 1913 | CRC: 1419439188

                
ID   AM048831; SV 1; linear; genomic RNA; STD; VRL; 1913 BP.
XX
AC   AM048831;
XX
DT   08-JAN-2007 (Rel. 90, Created)
DT   08-JAN-2007 (Rel. 90, Last updated, Version 1)
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DE   Cucumber mosaic virus 3a gene and CP gene for coat protein, genomic RNA,
DE   isolate VN-Bavi
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KW   3a gene; 3a protein; coat protein; CP gene.
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OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Cucumovirus.
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RN   [1]
RP   1-1913
RA   Chu H.H.;
RT   ;
RL   Submitted (08-JUL-2005) to the EMBL/GenBank/DDBJ databases.
RL   Chu H.H., Plant Cell Technology, Institute of Biotechnology (IBT), VAST,
RL   Hoang Quoc Viet Str. 18, Cau Giay, Hanoi, 10000, VIET NAM.
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RN   [2]
RA   Chu H.H., Nguyen H.M., Pham V.T., Nghiem M.N., Tran K.D., Tran V.T.,
RA   Le B.T.;
RT   "Genetic diversity among Vietnam isolates of Cucumber mosaic virus";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1913
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /specific_host="Nicotiana tabaccum"
FT                   /isolate="VN-Bavi"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Ha Tay province"
FT                   /db_xref="taxon:12305"
FT   CDS             3. .839
FT                   /gene="3a"
FT                   /product="3a protein"
FT                   /protein_id="CAJ15159.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDELQKILFSPDAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIASFFKSGYDAGELSSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLKIYLADLGDKELSPIDRQCVTLHNHDLPALVSFQPTYDCPMEIVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIESSQYVLTDSKINQNARSESEENVESPPIVIGSPSASRSEAFRPQVVNGL"
FT   CDS             1135. .1791
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="CAJ15160.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSASSSADANFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEFDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV"
XX
SQ   Sequence 1913 BP; 454 A; 456 C; 446 G; 557 T; 0 other;

am048831 Length: 1913  08-JAN-2007  Type: N  Check: 1569  ..

       1  gcatggcttt ccaaggtacc agtaggactt taactcaaca gtcctcagcg
      51  gctacgtctg atgaacttca aaagatatta tttagccctg acgccatcaa
     101  gaaaatggct actgagtgtg acctaggccg gcatcattgg atgcgcgctg
     151  ataacgctat ttcagtccgg cccctcgttc ccgaagtaac ccacggtcgt
     201  attgcttctt tctttaagtc tggatatgac gctggtgaat tgagttctaa
     251  aggatacatg agcgttcctc aggtattgtg tgctgttact cgaacagttt
     301  ctaccgatgc cgaaggatct ttgaaaattt acctagctga tttaggcgat
     351  aaggagttat ctcccataga tagacaatgc gtcacattac ataaccatga
     401  tcttcccgct ttagtgtcat tccagccgac gtatgactgt cctatggaaa
     451  ttgttgggaa ccgtaagcgg tgttttgctg ttgttatcga aagacatggt
     501  tacattgggt ataccggcac cacagccagc gtgtgtagta attggcaagc
     551  acgattttct tctaagaaca ataactacac tcatatcgcg gctgggaaga
     601  ctctagtact gccgttcaac aggttagctg agcagacgaa accatcagcc
     651  gtcgcccgcc tgctgaagtc gcaactgaac aatatagaat cttcgcagta
     701  tgttttaaca gattcgaaga ttaatcagaa tgcgcgcagt gagtccgagg
     751  aaaatgttga gagccctcct atcgtaatcg ggagtccttc cgcgtcccgc
     801  tccgaagcct ttagaccgca ggtggttaac ggtctttagt gtcttcgttg
     851  cgtattagta tataagtatg tgtgagtctt aacataatac tatatctata
     901  gtgtcctgtg tgagttgata cagtagacaa ctgtgacgcg atgtcgtgtt
     951  gagaagagag cacatctggt cttagtaaac ccacaacata tctttgaggt
    1001  tcaattcctc tcgttccctg ttgggctcct ttactttttc atggatgctt
    1051  ctccacgaga ttacgtttcg tctacttatc ttagagtatt gtgctgtttt
    1101  tctctttgtg tagtagattg agtcgagtcg agtcatggac aaatctgaat
    1151  caaccagtgc tggtcgtaac cgtcgccgtc gtccgcgtcg cggttcccgc
    1201  tccgcctcct cctccgcgga tgctaacttt agagtcttgt cgcaacagct
    1251  ttcgcgactt aataagacgt tagcagctgg tcgtccaact attaaccacc
    1301  caacctttgt gggtagtgag cgttgtaaac ccgggtacac gttcacatct
    1351  atcaccctga aaccaccgaa aatagaccgt gggtcttatt atggtaaaag
    1401  gttgttgctt cctgattcag tcacagagtt cgataagaag cttgtttcgc
    1451  gcattcaaat tcgagttaat cctttgccga aatttgattc taccgtgtgg
    1501  gtgacagtcc gtaaagttcc tgcctcctcg gacttatccg ttgccgccat
    1551  ctctgctatg ttcgcggacg gagcctcacc ggtactggtt tatcagtatg
    1601  ctgcatccgg agtccaagcc aacaataaat tgttgtatga tctttcggcg
    1651  atgcgcgctg atattggtga catgcgaaag tatgccgttc tcgtgtactc
    1701  aaaagacgat gcactcgaga cggatgagct agtacttcat gtcgacattg
    1751  agcaccaacg cattcccacg tcaggggtgc tcccagtttg aactcgtgtt
    1801  ttcccggaac cctctctcca atttctgtgg cgagagctga gttggtagtg
    1851  ttgctataaa ctgcctgaag tcactaaacg ctttgcggtg aacgggttgt
    1901  ccatccagct tac