Sequence of DPV Sugarcane yellow leaf virus
Sugarcane yellow leaf virus complete genome, isolate BRA-YL1
ACC No: AM072750
Dated: 2008-07-23 | Length: 5612 | CRC: 394514727
ID AM072750; SV 1; linear; genomic RNA; STD; VRL; 5612 BP.
XX
AC AM072750;
XX
DT 07-FEB-2006 (Rel. 86, Created)
DT 23-JUL-2008 (Rel. 96, Last updated, Version 2)
XX
DE Sugarcane yellow leaf virus complete genome, isolate BRA-YL1
XX
KW aphid transmission factor; capsid protein; complete genome;
KW movement protein p17; multifunctional protein; ORF0; ORF1; ORF2; ORF3;
KW ORF4; ORF5; RNA-directed RNA polymerase.
XX
OS Sugarcane yellow leaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-5612
RA Royer M.;
RT ;
RL Submitted (21-JUL-2005) to the EMBL/GenBank/DDBJ databases.
RL Royer M., UMR BGPI, CIRAD, TA 41K, Campus International de Baillarguet,
RL Montpellier cedex 5, 34398, FRANCE.
XX
RN [3]
RA Abu Ahmad Y., Rassaby L., Royer M., Borg Z., Braithwaite K.S., Mirkov T.E.,
RA Irey M.S., Perrier X., Smith G.R., Rott P.;
RT "Yellow leaf of sugarcane is caused by at least three differentgenotypes of
RT sugarcane yellow leaf virus, one of which predominates on theIsland of
RT Reunion";
RL Arch. Virol. 151(7):1355-1371(2006).
XX
FH Key Location/Qualifiers
FH
FT source 1. .5612
FT /organism="Sugarcane yellow leaf virus"
FT /specific_host="Saccharum hybrid cultivar SP71-6163"
FT /isolate="BRA-YL1"
FT /mol_type="genomic RNA"
FT /country="Brazil"
FT /isolation_source="leaf"
FT /virion
FT /db_xref="taxon:94290"
FT CDS 1. .771
FT /gene="ORF0"
FT /product="hypothetical protein"
FT /db_xref="UniProtKB/TrEMBL:Q2L3J2"
FT /protein_id="CAJ26249.1"
FT /translation="MLFNEFSVEGIKFRAHESTSPVFRGEVSRCLTYYRVFACKWVELT
FT YQDPLTRHLVQDYYGPNTPVYNWLEHIRLIVXTMVPILLLPDTTIGRHIHIKRQYLQSV
FT LLWLARNKLYYRVKRCRSKRFVLEQDHIGPELFRTQLLQYAGLDVFQDVARLQDFLERG
FT YDTFRSVLGVHLLEHERFVSRILEQPVMEPDQAVRLCFHYHNTLDHDDDDSGLETDFDN
FT LSLGRPYINGLPPNEKIIFIHSNLVGRSTYSHDI"
FT CDS join(176. .1669,1669. .3387)
FT /gene="ORF2"
FT /product="RNA-directed RNA polymerase"
FT /EC_number="2.7.7.48"
FT /note="ribosomal slippage"
FT /db_xref="GOA:Q2L3J1"
FT /db_xref="InterPro:IPR000382"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:Q2L3J1"
FT /protein_id="CAJ26250.1"
FT /translation="MAPTLPFTTGWSXYALLLXLWCLFCSCQTQPLDGTSILRDSTSSL
FT SFYGLPATNSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWLDCKTFSRE
FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIKLYVYAFTIITRLIMTMTILAWKPILI
FT ICLLVVLTSMVYHLMRKLFSFIQIWWVVAPILMIYRTVTYIHRRLFASRRDEKMVQGFK
FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI
FT KIPLTEFQVLLPANAMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM
FT MHNAKVTGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP
FT VKGLTAPNFVYESPSLQGDVFNNADISDIADYAEEVYEKALAEPKVWKPASGKYWWEMA
FT EEEDDFVVEARSPPPDKPVENATAKEQTPASTVEKAMVADSADSRPGKRAKWRRPLKNT
FT GIHPAQARRIYKRVAQQHRLAVDSKDRPELHCNEGGGETAASGPEQTAAERREEVAQKT
FT QDLEHFFQAAYKWEESTSDIPGFRKCGKLPALYHPPKPKSTQWGERIISEHPEMASKVA
FT GFGWPSFGAQAEETSLRLQAARWLKRAESAEKPTEKQRKLVIDRVVKAYEPCRTNAPHT
FT SSSGSLIWSDFLKDFKEAVNSLELDAGIGLPYKLLHKDTHRQMVEDPKFLPLLTRLTWN
FT RLQKMSQVDFQEMTPEQLVREGLCDPIRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLV
FT ARVLFQAQNKREIALWRAIPSKPGFGLSTDREAREFIESLSKTVGCSPAGVIHGWRNKI
FT VPTDCSGFDWSVADWMLEDDMEVRNLLTIDNNELTRRLRACWLKCITNSVICTSGGVLY
FT AQTHPGVQKSGSYNTSSSNSRIRVMAAFHCGADWAIAMGDDALESPNSNINAYQKLGFK
FT VEVASQLEFCSHVFEQEDLARPLNVNKMLHRLIFGYNPACGNAEVLCNYLQAVASVLNE
FT LRHDPQLVATLHEWLVPGAATK"
FT CDS 176. .2128
FT /gene="ORF1"
FT /product="multifunctional protein"
FT /db_xref="GOA:Q2L3J0"
FT /db_xref="InterPro:IPR000382"
FT /db_xref="UniProtKB/TrEMBL:Q2L3J0"
FT /protein_id="CAJ26251.1"
FT /translation="MAPTLPFTTGWSXYALLLXLWCLFCSCQTQPLDGTSILRDSTSSL
FT SFYGLPATNSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWLDCKTFSRE
FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIKLYVYAFTIITRLIMTMTILAWKPILI
FT ICLLVVLTSMVYHLMRKLFSFIQIWWVVAPILMIYRTVTYIHRRLFASRRDEKMVQGFK
FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI
FT KIPLTEFQVLLPANAMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM
FT MHNAKVTGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP
FT VKGLTAPNFVYESPSLQGDVFNNADISDIADYAEEVYEKALAEPKVWKPASGKYWWEMA
FT EEEDDFVVEARSPPPDKPVENATAKEQTPASTVEKAMVADQLTPDQGNEPSGADHLKTP
FT ESTPLKQDESTKELLXNIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKR
FT KTSNTSSKPHTNGKSPPVISQGSGNAANSPRYTIPQNRRAHNGESASSQSTQKWRPKSP
FT VSGGPPSAPKPKRQV"
FT CDS 3582. .5612
FT /transl_except=(pos:4170. .4172,aa:OTHER)
FT /gene="ORF5"
FT /product="putative aphid transmission factor"
FT /note="stop codon readthrough"
FT /db_xref="GOA:Q2L3I9"
FT /db_xref="InterPro:IPR000893"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q2L3I9"
FT /protein_id="CAJ26252.1"
FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG
FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLPKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEGDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT
FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPTPTPPAPTPAPAPKY
FT FGYQGVPNNIVKTRGNSEYLDVGPLENVTMYLWKDESWSIEQLSAGYRVNNRERAIPFV
FT LFPVDKGKYSVFIQCEGFKAVKAKGGTNDGKMSGFPCDNANLAGWRAYAYSGCTISNYR
FT TSDSNVPGHPDMKVNGGSFTDQLVERDFSCSFHLEVPQQGYFGLEAPPIEKSDHFNFVV
FT SYANFTDKILEWGSISVAMDEVNDGAYSRSKWDKTTAMSARLPTQVSAPSEVYTPEAPE
FT QPTNEGTESMPPAPNPALGPDNPATKEPTPKIVDNPDPKVLNWLNNQRDKPVVEEVLRE
FT SPIYASPPPRLLVPTHADTLRQADKVRRALMANASRSASPPPMNTEVPXLGATDTASLS
FT GSLRGGSLRGNLGSRPSLPRVADSPPRSVSPARSETSTLQGGSLSGGSLRGGNLXALPX
FT ATREQRREYERLKNSQGKTVAKAHAKEHGYKPPKSSSSLFG"
FT CDS 3582. .4172
FT /gene="ORF3"
FT /product="capsid protein"
FT /db_xref="GOA:Q2L3I8"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q2L3I8"
FT /protein_id="CAJ26253.1"
FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG
FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLPKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEGDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT
FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK"
FT CDS 3613. .4065
FT /gene="ORF4"
FT /product="putative movement protein p17"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:Q2L3I7"
FT /protein_id="CAJ26254.1"
FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE
FT ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYPKPTMSIKSQVSLFSITHAPPT
FT QLQVQSHLKGIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS"
XX
SQ Sequence 5612 BP; 1502 A; 1464 C; 1350 G; 1287 T; 9 other;
am072750 Length: 5612 23-JUL-2008 Type: N Check: 3137 ..
1 atgcttttca acgaattctc tgttgaggga attaaattca gagcacacga
51 gagcacttca cccgtctttc gtggggaggt ttccaggtgt ttgacctact
101 acagagtctt cgcctgcaag tgggttgagt taacctacca agatccactc
151 acacgccatc tagtacaaga ttactatggc cccaacactc ccgtttacaa
201 ctggctggag cayatacgcc ttattgttgy yactatggtg cctattctgc
251 tcctgccaga cacaaccatt ggacggcaca tccatattaa gagacagtac
301 ctccagtctg tccttttatg gcttgcccgc aacaaactct actatagagt
351 taagagatgc cgttccaagc ggtttgtact cgagcaagat cacatcggcc
401 ccgaactttt ccgaactcag ctactccagt atgctgggtt ggatgttttt
451 caagatgtgg ctcgattgca agactttctc gagagaggct acgacacttt
501 ccgatcggtt cttggagtac accttctcga acacgaaagg tttgttagtc
551 gaattcttga acaacctgtt atggaacctg atcaagctgt acgtttatgc
601 tttcactatc ataacacgct tgatcatgac gatgacgatt ctggcctgga
651 aaccgatttt gataatctgt ctcttggtcg tccttacatc aatggtctac
701 cacctaatga gaaaattatt ttcattcatt caaatttggt gggtcgtagc
751 acctattctc atgatatata ggaccgtcac gtacatccac agaaggttgt
801 tcgcttcacg aagggacgag aaaatggtcc aaggtttcaa aagctttgcc
851 gtccccatgt caccaccagg acactcagtg cttgagatag tacaccccga
901 tgattctcac atgggatatg catcctgtgt tcgattgaaa aacggggaag
951 aggctctcat gacatccgtt cactgcataa gcgattcctt caaggttcgc
1001 tcgttcagga atggtatcaa gatccctcta acggaattcc aagtgctgtt
1051 gcccgccaat gcgatggaca ttgttcttct tcgaggccca cctgagtgga
1101 agtccatcct tggagccaaa gcagcccatt tcactccagt caaccagctc
1151 aacaaaggag ctgtgtcttt cttcattttc gacaaggagt ggatgatgca
1201 caacgcaaaa gtcacaggaa ctgatggttt ttatgccaca gttcttagta
1251 acactgagaa gggctacagt ggcgccccct actggaatgg gaaatctata
1301 gtaggggtgc ataaagggca cgtgtacgga gacgattcta agaattacaa
1351 tcttatgtcg ccgattcccc ctgtcaaggg gttgacggcg cctaattttg
1401 tgtatgagtc tccgtctctg caaggagatg tctttaacaa cgccgacatt
1451 tcagacattg ctgattacgc cgaggaggtg tatgagaaag cccttgcaga
1501 gcctaaagtg tggaaacctg ccagcggtaa gtactggtgg gaaatggctg
1551 aagaagagga tgattttgtc gttgaggcaa ggtcacctcc ccctgataaa
1601 cctgttgaga acgctacagc aaaagagcag actccagctt cgactgtcga
1651 gaaagctatg gttgctgatc agctgactcc agaccaggga aacgagccaa
1701 gtggcgccga ccacttaaaa acaccggaat ccaccccgct caagcaagac
1751 gaatctacaa aagagttgct carcaacatc gtctcgcagt tgattcaaaa
1801 gatcgacctg agctccattg caacgagggt ggaggagaaa ctgctgcgtc
1851 aggcccagaa caaacagcag cagaacggag ggaagaagtc gcccagaaaa
1901 cgcaagacct cgaacacttc ttccaagccg catacaaatg ggaagagtcc
1951 accagtgata tcccagggtt caggaaatgc ggcaaactcc ccgcgctata
2001 ccatccccca aaaccgaaga gcacacaatg gggagagcgc atcatctcag
2051 agcacccaga aatggcgtcc aaagtcgccg gtttcgggtg gccctccttc
2101 ggcgcccaag ccgaagagac aagtctgaga ctccaagcgg cacgctggct
2151 taaacgagct gagtcagcgg aaaagccgac agaaaaacaa cgcaagctcg
2201 tcattgatcg tgtggtcaag gcatatgaac cgtgtagaac caatgcccca
2251 cacaccagct cctctggcag cctcatctgg tccgacttct tgaaagattt
2301 caaggaggct gtcaactcac tagaactcga tgcaggaata ggtctcccat
2351 acaaacttct tcacaaagac actcatcgtc aaatggttga agaccccaaa
2401 ttcctgccgc tcctgacgcg attgacctgg aaccgtttac agaagatgtc
2451 ccaggttgac ttccaggaga tgactcctga acaactagtg agagaaggat
2501 tgtgcgatcc gattcgtttg ttcgtcaaag gagaaccgca caagcaggca
2551 aagcttgatg aagggcgcta ccgcctcatc atgtcagtct cgctggtaga
2601 tcaactggta gcccgggttt tgtttcaggc acaaaacaaa agagagatag
2651 ctttgtggag agctatccct tcaaagcccg gtttcggctt atccacagac
2701 agggaagcac gcgaattcat tgaatccctg tccaagacag tagggtgttc
2751 cccagcagga gtcattcatg gctggaggaa caagatcgta cccaccgact
2801 gttccggttt tgactggtca gtcgccgact ggatgctcga agacgacatg
2851 gaagtgagaa atcttctcac aatcgacaac aacgagctaa cccgccgcct
2901 tagggcgtgc tggttgaagt gcatcacaaa ctctgtgatt tgcacatccg
2951 gcggtgtctt gtacgcccaa actcatcctg gagtgcaaaa atctggatct
3001 tacaacacga gttcatccaa ttccaggatt cgagtgatgg ccgcttttca
3051 ttgcggcgca gattgggcga tagccatggg agacgatgca cttgagtctc
3101 caaactccaa catcaacgcg tatcaaaagt tggggttcaa agtcgaggtt
3151 gcctcacagc tagaattttg ctcacacgtc tttgagcagg aggacctcgc
3201 caggccgttg aacgtaaaca aaatgcttca tcgtttgatc tttggataca
3251 atccggcctg tggcaacgcg gaggtattgt gtaattacct ccaagctgtg
3301 gcttctgttc tcaacgagct tcgccatgat ccacagctag ttgctaccct
3351 ccatgagtgg ctggtccctg gcgccgccac aaaataaata cggagggaca
3401 tcccgagcca ccatataggt tgcaagagtg gaacgggaag tcctatagat
3451 aagccgcgcg attctggatt acaaacttct agcgggagtt ctcatcggtg
3501 ttctcatcgc aatcccccta gtgatcatag cggcttacct gatattcctc
3551 aaaatcagtg cacacatccg agcgatagtg aatgaatacg ggcgctaacc
3601 gctcacgaag gaatgtcaga agacgcgcta accgtcgtag acagactcgg
3651 ccagtggtcg tggtccgggc tcccccagga cctagacgag tacgacgacg
3701 tagagcacgt gttggaggaa acgctgtgcg aggaccggga ggaagaagca
3751 accgggatgt tctcactttc acggttgacg atctcaaagc caactcaacc
3801 gggatcctca aattcggacc gaacttatct cagtacgcag cgttcaacaa
3851 tggcttaccc aaagcctacc atgagtataa aatcacaagt ctcactattc
3901 agtataactc atgctcctcc gacgcaactc caggtgcaat cgcacttgaa
3951 ggggatacat cctgctccca aacaacaaca ggctccaaga ttactagctt
4001 ccccgtcaag aggaacgcca agaaagtctt cccggccccc ttcatcaggg
4051 ggaaagattt catgactacg tcagctgacc aattttggtt gctgtacaaa
4101 gggaatggag actcgagcct agcaggacaa ttcgtctgcc gatttgaatg
4151 ccttttccag aatcccaaat aggtaggcga cgctccccca acacccaccc
4201 caacaccaac cccacccgct ccgaccccgg caccggctcc caagtatttt
4251 ggataccaag gagtgccgaa caacatcgtg aaaacaagag gaaactctga
4301 atatctagat gtgggtccgc tcgaaaatgt gaccatgtat ctttggaaag
4351 acgaatcgtg gagcattgag caactgtcag ccggatatcg cgttaacaat
4401 cgagaacgtg ccataccctt tgtcctcttt ccagtggata aaggcaaata
4451 ctccgtgttt atacaatgtg agggctttaa ggcagttaaa gccaaaggag
4501 gcacgaacga cggcaagatg agcgggtttc cttgtgacaa tgcaaatctc
4551 gcgggttggc gagcatacgc atatagtggg tgtacaatct ctaattatag
4601 gacatcggac tctaatgttc ctggtcatcc ggacatgaaa gtcaatggtg
4651 gatcttttac cgaccaattg gtcgagagag atttttcttg ttcatttcac
4701 cttgaggtgc ctcaacaagg ctattttggc ctagaggccc cacccattga
4751 aaagagtgat catttcaatt ttgtggtgtc ttacgctaac ttcactgata
4801 aaatcctgga atggggttca atctccgtag cgatggacga ggtaaatgac
4851 ggagcgtata gtagatcaaa atgggataag actactgcaa tgagtgctcg
4901 tttgccgact caggtgagcg ccccctctga ggtttacacc ccggaagcac
4951 ctgagcaacc gactaacgaa gggacggaga gtatgcctcc agccccgaac
5001 ccggcactgg gaccggacaa cccagcaacc aaagaaccca cgcccaaaat
5051 cgtggataat ccggatccaa aggtactcaa ctggctcaac aaccagcgag
5101 ataaacctgt ggtggaagag gttttgcgtg aatctccgat ttatgcttct
5151 ccaccccccc gtctcctagt tccgactcat gccgacactt taagacaggc
5201 ggataaggtc cggagagctc tcatggctaa cgcttcacgt tcagcctcac
5251 ctccccccat gaataccgaa gttcctrttc ttggggccac tgacactgct
5301 tctctaagtg gatcattacg cggtggctcc ctcagaggta atttgggttc
5351 tcgcccctct cttccgaggg tcgccgacag ccctccccgt tctgtaagtc
5401 cggctcgttc ygagaccagc actttacagg gcggttctct gagcggtggt
5451 tctttgagag gwggcaacct tcrggctttg cccraggcca caagagagca
5501 aaggagggaa tatgaacgtc tcaagaattc acaagggaag acggtagcaa
5551 aagcccatgc taaagaacac ggttacaagc caccgaaatc ttcctcctcc
5601 ttgtttggtt ga