Sequence of DPV Sugarcane yellow leaf virus
Sugarcane yellow leaf virus complete genome, isolate PER-YL1a
ACC No: AM072752
Dated: 2008-07-23 | Length: 5612 | CRC: -343922217
ID AM072752; SV 1; linear; genomic RNA; STD; VRL; 5612 BP.
XX
AC AM072752;
XX
DT 07-FEB-2006 (Rel. 86, Created)
DT 23-JUL-2008 (Rel. 96, Last updated, Version 2)
XX
DE Sugarcane yellow leaf virus complete genome, isolate PER-YL1a
XX
KW aphid transmission factor; capsid protein; complete genome;
KW movement protein p17; multifunctional protein; ORF0; ORF1; ORF2; ORF3;
KW ORF4; ORF5; RNA-directed RNA polymerase.
XX
OS Sugarcane yellow leaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-5612
RA Royer M.;
RT ;
RL Submitted (21-JUL-2005) to the EMBL/GenBank/DDBJ databases.
RL Royer M., UMR BGPI, CIRAD, TA 41K, Campus International de Baillarguet,
RL Montpellier cedex 5, 34398, FRANCE.
XX
RN [3]
RA Abu Ahmad Y., Rassaby L., Royer M., Borg Z., Braithwaite K.S., Mirkov T.E.,
RA Irey M.S., Perrier X., Smith G.R., Rott P.;
RT "Yellow leaf of sugarcane is caused by at least three differentgenotypes of
RT sugarcane yellow leaf virus, one of which predominates on theIsland of
RT Reunion";
RL Arch. Virol. 151(7):1355-1371(2006).
XX
FH Key Location/Qualifiers
FH
FT source 1. .5612
FT /organism="Sugarcane yellow leaf virus"
FT /specific_host="Saccharum hybrid cultivar H50-7209"
FT /isolate="PER-YL1a"
FT /mol_type="genomic RNA"
FT /country="Peru"
FT /isolation_source="leaf"
FT /virion
FT /db_xref="taxon:94290"
FT CDS 1. .771
FT /gene="ORF0"
FT /product="hypothetical protein"
FT /db_xref="UniProtKB/TrEMBL:Q2L3I0"
FT /protein_id="CAJ26261.1"
FT /translation="MLFNEFSVEGIKFRAHESTSPVFRGEVSRCLTYYRVFACKWVELT
FT YQDPLTRHLVQDYYGPNTPVYNWLEHIRLIVVTMVPILLLPDTTIGRHIHIKRQYLQSV
FT LLWLARNKLYYRVKRCRSKRFVLEQDHIGPELFRTQLLQYAGLDVFQDVARLQDFLERG
FT YDTFRSVLGVHLLEHERFVSRILEQPIMEPDQAVHLCFHYHNTLDHDDDDSGLEADFNN
FT LSLGRPYIDGLPPNEKIIFIHSNLVGHSTSSHNV"
FT CDS join(176. .1672,1672. .3387)
FT /gene="ORF2"
FT /product="RNA-directed RNA polymerase"
FT /EC_number="2.7.7.48"
FT /note="ribosomal slippage"
FT /db_xref="GOA:Q2L3H9"
FT /db_xref="InterPro:IPR000382"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:Q2L3H9"
FT /protein_id="CAJ26262.1"
FT /translation="MAPTLPFTTGWSTYALLLSLWCLFCSCQTQPLDGTSILRDSTSSL
FT SFYGLPATNSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWLDCKTFSRE
FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIKLYIYAFTIITRLIMTMTILAWKPILI
FT ICLLVVLTSMVYHLMRKLFSFIQIWWAIAPLLIMYRTVMWIHRRLFASRGDEKMVQGFK
FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI
FT KIPLTEFQVLLPANVMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM
FT MHNAKITGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP
FT VKGLTAPNFVYESPSLQGDSFSDADVSDIADYAEKVYEKALAEPKVWKPASGKYWWEMA
FT EEEDDFVVEANSPLPDKPVENATAKEQTPALTVEKATVADKADSRPGKRAKWRRPLKNT
FT GIHPAQARRIYKRVAQQHRLAVDSKDRPELHCNEGGGETAASGPEQTAAERREEVAQKT
FT QDLEHFFHAAYKWEESTSDIPGFRKCGKLPALYHPPKPKSTQWGERIISEHPEMASKVA
FT GFGWPSFGAQAEETSLRLQAARWLKRAGSAEKPTEKQRKLVIDRVVKAYEPCKTNAPHT
FT SSSGSLIWSDFLKDFKEAVNSLELDAGIGLPYKLLRKDTHRQMVEDPKFLPLLTRLTWN
FT RLQKMSQVDFQEMTPEQLVREGLCDPIRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLV
FT ARVLFQAQNKREIALWRAIPSKPGFGLSTDREAREFIESLSKTVGCSPAEVIHGWRDKI
FT VPTDCSGFDWSVADWMLEDDMEVRNLLTINNNELTRRLRACWLKCITNSVICTSGGVLY
FT AQTHPGVQKSGSYNTSSSNSRIRVMAAFHCSADWAIAMGDDALESPNSDINAYQRLGFK
FT VEVASQLEFCSHVFEQEDLARPLNVNKMLYRLIFGYNPACGNAEVLCNYLQAVASVLNE
FT LRHDPQLVATLHEWLVPGAATK"
FT CDS 176. .2128
FT /gene="ORF1"
FT /product="multifunctional protein"
FT /db_xref="GOA:Q2L3H8"
FT /db_xref="InterPro:IPR000382"
FT /db_xref="UniProtKB/TrEMBL:Q2L3H8"
FT /protein_id="CAJ26263.1"
FT /translation="MAPTLPFTTGWSTYALLLSLWCLFCSCQTQPLDGTSILRDSTSSL
FT SFYGLPATNSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWLDCKTFSRE
FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIKLYIYAFTIITRLIMTMTILAWKPILI
FT ICLLVVLTSMVYHLMRKLFSFIQIWWAIAPLLIMYRTVMWIHRRLFASRGDEKMVQGFK
FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI
FT KIPLTEFQVLLPANVMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM
FT MHNAKITGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP
FT VKGLTAPNFVYESPSLQGDSFSDADVSDIADYAEKVYEKALAEPKVWKPASGKYWWEMA
FT EEEDDFVVEANSPLPDKPVENATAKEQTPALTVEKATVADKPTPDQGNEPSGADHLKTP
FT ESTLLKQDESTKELLNNIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKR
FT KTSNTSSMPHTNGKSPPATSQDSGNAVNSPRYTIPQNRRAHNGESASSQSTQKWRPKSP
FT VSGGPPSAPKPRRRV"
FT CDS 3582. .5612
FT /transl_except=(pos:4170. .4172,aa:OTHER)
FT /gene="ORF5"
FT /product="putative aphid transmission factor"
FT /note="stop codon readthrough"
FT /db_xref="GOA:Q2L3H7"
FT /db_xref="InterPro:IPR000893"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q2L3H7"
FT /protein_id="CAJ26264.1"
FT /translation="MNTGANRPRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG
FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGVLKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT
FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPTPTPPAPTPAPASKY
FT LGYQGVPNNIVKTRGNSEYLDVGPLENVTMYLWQDESWSIEQLSAGYRVNNRERAIPFV
FT LFPVDKGKYSVFIQCEGFKAVKAKGGTNDGKMSGFLCDNANLAGWRAYAYSGCTISNYR
FT TSDSNVPGHPDMKVNGGSFTDQLVERDFSCSFHLEVPQQGYFGLEAPPIEKSDHFNFVV
FT SYANFTDKILEWGSISVAIDEVNDGAYSRSKWDKTTAMSARLPTQVSAPSEVYTPETPE
FT QPTDEGTESMPPAPNPALGPDNPATKEPTPKIVDNPDPKVLNWLNNQRDKPVVEEVLRE
FT SPIYAPPPPPSLTPTSADTLRQADKVRRALMANASRAASPPPMTTEVPILGAADTASLS
FT GSLXGGSLRGNLGSRPSLPRVXDSPPRSVSPVRSETSTLQGGSLSGGSLRGGNLQALPE
FT ATREQRREYERLKNSQGXTVARAHAKEHGYKPPKSSSSLFG"
FT CDS 3582. .4172
FT /gene="ORF3"
FT /product="capsid protein"
FT /db_xref="GOA:Q2L3H0"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q2L3H0"
FT /protein_id="CAJ26265.1"
FT /translation="MNTGANRPRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG
FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGVLKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT
FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK"
FT CDS 3613. .4065
FT /gene="ORF4"
FT /product="putative movement protein p17"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:Q2L3G9"
FT /protein_id="CAJ26266.1"
FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE
FT ATGMSSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT
FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS"
XX
SQ Sequence 5612 BP; 1500 A; 1467 C; 1347 G; 1294 T; 4 other;
am072752 Length: 5612 23-JUL-2008 Type: N Check: 3496 ..
1 atgcttttta acgaattctc tgttgaggga attaaattca gagcacacga
51 aagcacttca cccgtctttc gtggggaggt ttccaggtgt ttgacttact
101 acagagtctt cgcctgcaag tgggttgagt tgacctatca agatccactc
151 acacgccatc tagtacaaga ttactatggc cccaacactc ccgtttacaa
201 ctggctggag cacatacgcc ttattgttgt cactatggtg cctattctgc
251 tcctgccaga cacaaccatt ggacggcaca tccatattaa gagacagtac
301 ctccagtctg tccttttatg gcttgcccgc aacaaactct actatagagt
351 taagagatgc cgttccaagc ggtttgtact cgagcaagat cacatcggcc
401 ccgaactttt ccgaactcag ttactccagt atgctgggtt ggatgttttt
451 caagatgtgg ctcgattgca agactttctc gagagaggct acgacacttt
501 ccgatcggtt cttggagtac accttctcga acacgaaagg tttgttagtc
551 gaattcttga acaacctatt atggaacctg atcaagctgt acatttatgc
601 tttcactatc ataacacgct tgatcatgac gatgacgatt ctggcctgga
651 agccgatttt aataatctgt ctcttggtcg tccttacatc gatggtctac
701 cacctaatga gaaaattatt ttcattcatt caaatttggt gggccatagc
751 acctcttctc ataatgtata ggaccgtcat gtggattcac agaaggttgt
801 tcgcttcgcg tggggacgag aaaatggtcc aaggtttcaa aagttttgcc
851 gtccccatgt caccaccagg acactcagtg cttgagatag tacaccctga
901 tgattctcac atgggatatg catcctgtgt tcgattgaaa aacggggaag
951 aggctctcat gacatctgtt cactgcataa gcgattcttt taaagttcgc
1001 tcgttcagga atggtatcaa gatccctcta acggaattcc aagtgctgtt
1051 gcccgccaat gtgatggaca ttgttcttct tcgaggccca cccgagtgga
1101 aatccatcct tggagccaaa gcagcccact tcactccagt taaccagctc
1151 aacaaaggag ctgtgtcttt cttcattttc gataaggagt ggatgatgca
1201 caatgcaaag attacaggaa ctgacggttt ttatgccaca gttctcagta
1251 acactgaaaa gggctacagt ggcgccccct attggaatgg gaaatctata
1301 gtaggggtgc ataaagggca cgtgtacgga gacgattcca agaattacaa
1351 tcttatgtca ccgattcccc ctgtcaaggg gttaacggcg cctaattttg
1401 tgtacgagtc tccgtctctg caaggagatt cttttagcga cgccgacgtt
1451 tcagacattg ctgattacgc cgagaaggtg tacgagaaag cccttgcaga
1501 gcctaaagtg tggaaacctg ccagcggcaa atactggtgg gaaatggcyg
1551 aagaagagga tgattttgtc gttgaggcaa attcacccct ccctgataaa
1601 cctgttgaga acgctacagc aaaagagcag actccagctt tgactgtcga
1651 gaaagctacg gttgctgata agccgactcc agaccaggga aacgagccaa
1701 gtggcgccga ccacttaaaa acaccggaat ccaccctgct caagcaagac
1751 gaatctacaa aagagttgct caacaacatc gtctcgcagt tgattcaaaa
1801 gatcgacctg agctccattg caacgagggt ggaggagaaa ctgctgcgtc
1851 aggcccagaa caaacagcag cagaacggag ggaagaagtc gcccagaaaa
1901 cgcaagacct cgaacacttc ttccatgccg catacaaatg ggaagagtcc
1951 accagcgaca tcccaggatt caggaaatgc ggtaaactcc ccgcgctata
2001 ccatccccca aaaccgaaga gcacacaatg gggagagcgc atcatctcag
2051 agcacccaga aatggcgtcc aaagtcgccg gtttcgggtg gccctccttc
2101 ggcgcccaag ccgaggagac gagtctgaga ctccaagcgg cacgctggct
2151 taaacgagct gggtcagcgg aaaagccgac agaaaaacaa cgcaagctcg
2201 tcattgatcg tgtggtcaag gcatatgaac cgtgcaaaac caatgcccca
2251 cacaccagct cctctggcag cctcatctgg tccgacttct tgaaagattt
2301 caaggaggct gtcaactcac tagaactcga cgcaggaata ggtctcccat
2351 ataaacttct tcgcaaagac actcaccgtc agatggtcga agaccccaaa
2401 ttcctgccgc tcctgacgcg attgacctgg aaccgtttac agaagatgtc
2451 ccaggttgat ttccaggaga tgactcctga acaactagtg agagaaggat
2501 tgtgcgatcc gattcgtttg ttcgtcaaag gagaaccgca caagcaggca
2551 aagcttgatg aagggcgcta ccgcctcatc atgtcagtct cgctggtaga
2601 tcaactggta gcccgggttt tgttccaagc acaaaacaaa agagagatag
2651 ctttgtggag agctatccct tcaaagcccg gtttcggctt atccacagac
2701 agggaagcac gcgaattcat cgaatccctg tccaagacag tagggtgttc
2751 cccagcagaa gtcattcatg gctggaggga caagatcgta cccaccgact
2801 gttccggttt cgactggtca gtcgccgact ggatgctcga agacgacatg
2851 gaagtgagaa atcttctcac tatcaacaac aacgagctaa cccgccgcct
2901 cagggcgtgc tggttgaagt gcatcacaaa ctctgtgatt tgcacgtccg
2951 gcggtgtctt gtacgcccaa actcatcctg gagtgcaaaa atctggatct
3001 tacaacacga gttcatccaa ttccaggatt cgagtaatgg ctgcttttca
3051 ttgcagcgca gattgggcga tagccatggg agacgatgca cttgagtctc
3101 caaactccga catcaacgcg tatcaaaggt tggggtttaa agtcgaggtt
3151 gcctcacagc tagaattttg ctcacacgtc tttgagcagg aggacctcgc
3201 caggccgttg aatgtgaaca aaatgcttta tcgtttgatc ttcggataca
3251 atccggcctg tggcaacgcg gaggtactgt gcaattacct ccaagctgtg
3301 gcttctgttc ttaacgaact tcgccatgat ccacagctag ttgctaccct
3351 ccatgagtgg ttggtccctg gcgccgccac aaaataaata cggaggggca
3401 tcccgagcca ccacataggt tgcaagagtg gaacgggaag tcctatagac
3451 aagccgcgcg attctggatt acaaacttct agcgggggtt ctcattggtg
3501 tcctcatcgc aatcccccta gtaatcatag cggcttacct gatattcctc
3551 aaaatcagtg cacacatccg agcgatagtg aatgaatacg ggcgctaacc
3601 gcccacgaag gaatgtcaga agacgcgcta accgtcgtag acagactcgg
3651 ccagtggtcg tggtccgggc tcccccagga cctagacgag tacgacgacg
3701 tagagcacgt gttggaggaa acgctgtgcg aggaccggga ggaagaagca
3751 accgggatgt cctcactttc acggttgacg atctcaaagc caactcaacc
3801 ggggtcctca aattcggacc gaacctatct cagtacgcag cgttcaacaa
3851 tggcttactc aaagcctacc atgagtataa aatcacaagt ctcactattc
3901 agtataactc atgctcctcc gacgcaactc caggtgcaat cgcacttgaa
3951 gtggatacat cctgctccca aacaacaaca ggctccaaga ttactagctt
4001 ccccgtcaag aggaacgcca agaaagtctt cccggccccc ttcatcaggg
4051 ggaaagattt catgactacg tcagctgacc agttttggtt gctgtacaaa
4101 gggaatggag actcgagcct agcaggacaa ttcgtctgcc gatttgaatg
4151 ccttttccag aatcccaaat aggtaggcga cgctccccca acacccaccc
4201 caacaccaac cccacccgct ccgaccccgg caccggcttc taagtatctt
4251 ggataccaag gagtgccgaa caacatcgtg aaaacaagag gaaactctga
4301 atatctagat gtgggtccgc tcgaaaatgt aaccatgtac ctttggcaag
4351 acgaatcgtg gagcattgag caactgtcag ccggatatcg cgttaacaat
4401 cgagaacgtg ccataccctt tgtcctcttt ccagtggata aaggcaaata
4451 ctccgtgttc atacaatgtg agggctttaa ggcagttaaa gccaaaggag
4501 gcacgaacga cggcaagatg agcgggtttc tttgtgacaa tgcaaatctc
4551 gcgggttggc gagcatacgc atatagtggg tgtacaatct ctaattatag
4601 aacatcagac tctaatgtcc ctggtcatcc agacatgaaa gttaatggtg
4651 gatcttttac cgaccagttg gttgagagag atttttcttg ttcatttcac
4701 ctcgaggtgc ctcaacaagg ctattttggc ctagaggccc cgcccattga
4751 aaagagtgat catttcaatt ttgtggtgtc ttacgctaac ttcactgata
4801 aaatcctgga atggggttca atctccgtag cgatagacga ggtgaatgac
4851 ggggcgtata gtagatcaaa atgggataag actactgcaa tgagtgctcg
4901 tttgccgacc caggtgagcg ccccttctga ggtttacacc ccggaaacac
4951 ctgagcaacc gactgacgaa gggacggaga gtatgcctcc agccccgaac
5001 ccggcactgg gaccggacaa cccagcaacc aaagaaccca cgccaaaaat
5051 cgtggataat ccggacccaa aggtactcaa ctggctcaac aaccagcgag
5101 ataaacctgt ggtggaagag gttttgcgtg aatctccgat ttatgctcct
5151 ccaccccccc catctctaac cccgacttct gccgacactt tgagacaggc
5201 ggataaggtc cggagagctc tcatggctaa cgcttcgcgc gcagcctcac
5251 ctccccccat gactaccgaa gttcctattc ttggggccgc tgacaccgct
5301 tctctaagtg gatcattacr cggtggctcc ctcagaggta atttgggttc
5351 tcgcccctcc cttccgaggg tckctgacag ccctccccgt tctgtaagtc
5401 cggttcgttc tgagaccagt actctacaag gcggttctct gagtggtggt
5451 tctttgaggg gtggtaacct tcaagctttg cctgaggcca caagagagca
5501 aaggagggaa tatgaacgtc ttaagaattc acaaggaarg acggtggcaa
5551 gagcccatgc taaagaacac ggttacaaac caccgaaatc ttcctcctcc
5601 ttatttggtt ga