Sequence of DPV Pepino mosaic virus

Pepino mosaic virus partial TGBp3 gene for triple gene block protein 3 and CP gene for coat protein, genomic RNA, clone Am 04.1, isolate 2

ACC No: AM113829

Dated: 2005-12-13 | Length: 811 | CRC: 2038484304

                
ID   AM113829   standard; genomic RNA; VRL; 811 BP.
XX
AC   AM113829;
XX
SV   AM113829.1
XX
DT   13-DEC-2005 (Rel. 86, Created)
DT   13-DEC-2005 (Rel. 86, Last updated, Version 1)
XX
DE   Pepino mosaic virus partial TGBp3 gene for triple gene block protein 3 and
DE   CP gene for coat protein, genomic RNA, clone Am 04.1, isolate 2
XX
KW   coat protein; CP gene; TGBp3 gene; triple gene block protein 3.
XX
OS   Pepino mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Potexvirus.
XX
RN   [1]
RP   1-811
RA   Pagan I.;
RT   ;
RL   Submitted (13-JUL-2005) to the EMBL/GenBank/DDBJ databases.
RL   Pagan I., Biotecnologia, E.T.S. Ingenieros Agronomos, Ciudad Universitaria,
RL   Madrid, 28040, SPAIN.
XX
RN   [2]
RA   Pagan I., Cordoba-Selles M., Martinez-Priego L., Fraile A., Malpica J.M.,
RA   Jorda C., Garcia-Arenal F.;
RT   "Genetic structure of the population of Pepino mosaic virus infecting
RT   tomato crops in Spain";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .811
FT                   /country="Spain:Almeria"
FT                   /db_xref="taxon:112229"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Pepino mosaic virus"
FT                   /clone="Am 04.1"
FT                   /isolate="2"
FT                   /isolation_source="Tomato"
FT   CDS             <1. .59
FT                   /codon_start=3
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /protein_id="CAJ34764.1"
FT                   /translation="KAINFSPWKGLSFPKFEN"
FT   CDS             98. .811
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="CAJ34765.1"
FT                   /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 811 BP; 233 A; 223 C; 160 G; 195 T; 0 other;

am113829 Length: 811  13-DEC-2005  Type: N  Check: 2551  ..

       1  ccaaagcaat caacttctcc ccttggaaag gattaagttt tcctaaattt
      51  gaaaattaat attaagtgtt cacaaaaatc aacttcaata aacaatcatg
     101  cctgacacaa cacctgttgc tgccacttca agtgcaccac ccacagccaa
     151  agatgctggt gccaaagctc cttctgactt ctcaaatccc aatacagctc
     201  ctagtctcag tgatttgaag aaagtcaagt atgtctccac cgtgacctcc
     251  gtggccacac cagctgaaat tgaagcccta ggcaaaatct tcaccgctat
     301  gggccttgcc gccaatgaga ctggtccggc catgtgggat ctagctcgtg
     351  catatgctga tgtgcagagt tctaaatcgg cacagctgat tggagctacc
     401  ccttccaacc cggcactatc acgccgagcc cttgctgctc agtttgatcg
     451  aatcaatata acccccaggc aattttgcat gtactttgcc aaagttgttt
     501  ggaacatact tctcgacagc aacattccac cagcaaattg ggccaaactt
     551  ggttaccaag aagatacaaa atttgctgca tttgacttct tcgatggagt
     601  caccaaccct gccagcctgc agcctgctga tggtcttatc aggcagccaa
     651  atgagaaaga actagctgct cactccgtag ctaagtacgg cgccttggct
     701  aggcaaaaga tctccacagg taattatatt accacacttg gagaagtcac
     751  acgtggacac atgggaggag ctaacaccat gtacgcgata gacgcacccc
     801  ctgaacttta a