Sequence of DPV Pepino mosaic virus

Pepino mosaic virus partial TGBp3 gene for triple gene block protein 3 and CP gene for coat protein, genomic RNA, clone Mu 04.10, isolate 2

ACC No: AM113840

Dated: 2005-12-13 | Length: 786 | CRC: 1474538779

                
ID   AM113840   standard; genomic RNA; VRL; 786 BP.
XX
AC   AM113840;
XX
SV   AM113840.1
XX
DT   13-DEC-2005 (Rel. 86, Created)
DT   13-DEC-2005 (Rel. 86, Last updated, Version 1)
XX
DE   Pepino mosaic virus partial TGBp3 gene for triple gene block protein 3 and
DE   CP gene for coat protein, genomic RNA, clone Mu 04.10, isolate 2
XX
KW   coat protein; CP gene; TGBp3 gene; triple gene block protein 3.
XX
OS   Pepino mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Potexvirus.
XX
RN   [1]
RP   1-786
RA   Pagan I.;
RT   ;
RL   Submitted (13-JUL-2005) to the EMBL/GenBank/DDBJ databases.
RL   Pagan I., Biotecnologia, E.T.S. Ingenieros Agronomos, Ciudad Universitaria,
RL   Madrid, 28040, SPAIN.
XX
RN   [2]
RA   Pagan I., Cordoba-Selles M., Martinez-Priego L., Fraile A., Malpica J.M.,
RA   Jorda C., Garcia-Arenal F.;
RT   "Genetic structure of the population of Pepino mosaic virus infecting
RT   tomato crops in Spain";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .786
FT                   /country="Spain:Murcia"
FT                   /db_xref="taxon:112229"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Pepino mosaic virus"
FT                   /clone="Mu 04.10"
FT                   /isolate="2"
FT                   /isolation_source="Tomato"
FT   CDS             <1. .35
FT                   /codon_start=3
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /protein_id="CAJ34786.1"
FT                   /translation="NGLSFPKFEN"
FT   CDS             73. .786
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="CAJ34787.1"
FT                   /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 786 BP; 223 A; 204 C; 156 G; 203 T; 0 other;

am113840 Length: 786  13-DEC-2005  Type: N  Check: 5454  ..

       1  ggaacgggtt aagttttcct aaatttgaaa attaatattg agtgttcaca
      51  aaatcaactt caataaacaa tcatggaaaa ccaacctaca gcttctaacc
     101  catcagatgt accaccaact gctgctcaag ctggtgccca gagcccagcc
     151  gacttctcaa atcctaatac agctccttcc ctaagtgatt tgaagaagat
     201  caaatacgtg tcaactgtca cttcagttgc cacgcctgct gaaattgagg
     251  cccttggcaa gatctttact gccatgggtt tagcagccaa tgagaccgga
     301  cctgccatgt gggacctcgc tcgtgcttat gctgatgtgc aaagttcaaa
     351  atctgcacaa cttataggtg ccacaccatc caaccctgct ttgtctagac
     401  gtgcacttgc tgcacagttt gatcgtatca atatcacacc cagacaattc
     451  tgcatgtatt ttgcaaaaat tgtttggaac atactgttag acagcaatgt
     501  gccacctgcc aactgggcaa aattgggcta tcaggaagat accaagtttg
     551  ctgcttttga cttctttgat ggagtcacaa atccagctag tctacagcct
     601  gcagatggcc taatcaggca gcccaatgaa aaagagcttg ctgctcactc
     651  ggttgctaaa tatggtgccc ttgcccgcca gaaaatatcc actggtaact
     701  acatcaccac ccttggtgaa gttacacgtg gtcacatggg cggcgccaac
     751  actatgtacg caattgatgc acctcccgaa ctttaa