Sequence of DPV Pepino mosaic virus

Pepino mosaic virus partial TGBp3 gene for triple gene block protein 3 and CP gene for coat protein, genomic RNA, clone Mu 04.15, isolate 2

ACC No: AM113845

Dated: 2005-12-13 | Length: 787 | CRC: 634140523

                
ID   AM113845   standard; genomic RNA; VRL; 787 BP.
XX
AC   AM113845;
XX
SV   AM113845.1
XX
DT   13-DEC-2005 (Rel. 86, Created)
DT   13-DEC-2005 (Rel. 86, Last updated, Version 1)
XX
DE   Pepino mosaic virus partial TGBp3 gene for triple gene block protein 3 and
DE   CP gene for coat protein, genomic RNA, clone Mu 04.15, isolate 2
XX
KW   coat protein; CP gene; TGBp3 gene; triple gene block protein 3.
XX
OS   Pepino mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Potexvirus.
XX
RN   [1]
RP   1-787
RA   Pagan I.;
RT   ;
RL   Submitted (13-JUL-2005) to the EMBL/GenBank/DDBJ databases.
RL   Pagan I., Biotecnologia, E.T.S. Ingenieros Agronomos, Ciudad Universitaria,
RL   Madrid, 28040, SPAIN.
XX
RN   [2]
RA   Pagan I., Cordoba-Selles M., Martinez-Priego L., Fraile A., Malpica J.M.,
RA   Jorda C., Garcia-Arenal F.;
RT   "Genetic structure of the population of Pepino mosaic virus infecting
RT   tomato crops in Spain";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .787
FT                   /country="Spain:Murcia"
FT                   /db_xref="taxon:112229"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Pepino mosaic virus"
FT                   /clone="Mu 04.15"
FT                   /isolate="2"
FT                   /isolation_source="Tomato"
FT   CDS             <1. .35
FT                   /codon_start=3
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /protein_id="CAJ34796.1"
FT                   /translation="NGLSFPKFEN"
FT   CDS             74. .787
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="CAJ34797.1"
FT                   /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 787 BP; 224 A; 202 C; 156 G; 205 T; 0 other;

am113845 Length: 787  13-DEC-2005  Type: N  Check: 621  ..

       1  ggaacgggtt aagttttcct aaatttgaaa attaatattg agtgttcaca
      51  aaaatcaact tcaataaaca atcatggaaa accaacctac agcttctaac
     101  ccatcagatg taccaccaac tgctgctcaa gctggtgccc agagcccagc
     151  cgacttctca aatcctaata cagctccttc cctaagtgat ttgaagaaga
     201  tcaaatacgt gtcaactgtc acttcagttg ccacgcctgc tgaaattgag
     251  gcccttggca agatctttac tgccatgggt ttagcagcca atgagaccgg
     301  acctgccatg tgggaccttg ctcgtgctta tgctgatgtg caaagttcaa
     351  aatctgcaca acttataggt gccacaccat ccaaccctgc tttgtctaga
     401  cgtgcacttg ctgcacagtt tgatcgtatc aatatcacac ccagacaatt
     451  ctgcatgtat tttgcaaaaa ttgtttggaa catactgtta gacagcaatg
     501  tgccacctgc caactgggca aaattgggct atcaggaaga taccaagttt
     551  gctgcttttg acttctttga tggagtcaca aatccagcta gtctacagcc
     601  tgcagatggc ctaatcaggc agcccaatga aaaagagctt gctgctcact
     651  cggttgctaa atatggtgcc cttgcccgcc agaaaatatc cactggtaac
     701  tacatcacca cccttggtga agttacacgt ggtcacatgg gcggcgccaa
     751  cactatgtac gcaattgatg cacctcctga actttaa