Sequence of DPV Cucumber mosaic virus

Cucumber mosaic virus 3a gene for movement protein, genomic RNA

ACC No: AM117572

Dated: 2005-12-08 | Length: 840 | CRC: 1179093112

                
ID   AM117572   standard; genomic RNA; VRL; 840 BP.
XX
AC   AM117572;
XX
SV   AM117572.1
XX
DT   07-DEC-2005 (Rel. 86, Created)
DT   08-DEC-2005 (Rel. 86, Last updated, Version 2)
XX
DE   Cucumber mosaic virus 3a gene for movement protein, genomic RNA
XX
KW   3a gene; movement protein.
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Cucumovirus.
XX
RN   [1]
RP   1-840
RA   Gupta R.;
RT   ;
RL   Submitted (25-OCT-2005) to the EMBL/GenBank/DDBJ databases.
RL   Gupta R., Virology Lab, Floriculture Division, Institute of Himalayan
RL   Bioresource Tech., P.O. Box - 6, Palampur, Himachal Pradesh - 176061,
RL   INDIA.
XX
RN   [2]
RA   Gupta R., Hallan V., Ram R., Zaidi A.A.;
RT   "Variation in 3a gene of cucumber mosaic virus among different isolates";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .840
FT                   /country="India:Palampur"
FT                   /db_xref="taxon:12305"
FT                   /mol_type="genomic RNA"
FT                   /virion
FT                   /organism="Cucumber mosaic virus"
FT                   /lab_host="Cucumis sativus"
FT                   /isolate="tagetus"
FT                   /segment="3"
FT                   /specific_host="Tagetus erectus"
FT   CDS             1. .840
FT                   /gene="3a"
FT                   /product="movement protein"
FT                   /protein_id="CAJ41286.1"
FT                   /translation="MAFQGTSRTLTQQSSAASSDDLQKILFSPDAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPQVTSNNLLSFFKSGYDAGELRSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLIIYLADLGDKELSPIDGQCVTLHNHELPALISFQPTYDCPMELVGNRHRCFAVVVE
FT                   RHGYIGYGGTTASVCSNWQAQFSSKNNNYTHAAAGKTLVLPYNRLAEHSKPSAVARPLK
FT                   SQLNNVSSSRYLLPNVALNQNASGHESEILSESPPIAIGSPSASRNNSFRPQVVNGL"
XX
SQ   Sequence 840 BP; 201 A; 199 C; 198 G; 242 T; 0 other;

am117572 Length: 840  08-DEC-2005  Type: N  Check: 6659  ..

       1  atggctttcc aaggtaccag taggacgtta actcaacagt cctcggcggc
      51  gtcgtctgac gacttacaga agatattatt cagccccgat gccatcaaga
     101  agatggctac tgagtgtgac ctaggtcgac atcattggat gcgcgcggat
     151  aacgccatct ctgtcagacc tctcgttccc caagtaacca gtaacaattt
     201  attgtctttc tttaaatctg ggtatgatgc cggtgaattg cgctctaaag
     251  gctatatgag cgttcctcaa gtactgtgtg ccgttaccag gacggtttct
     301  acggatgctg agggttcttt gattatttat ttggctgacc taggtgataa
     351  agaattatcc ccaattgatg ggcagtgtgt tactttacat aatcatgagc
     401  tccctgcttt gatatctttc caacctacct acgattgccc catggaatta
     451  gttggcaatc ggcatcgatg tttcgcggta gtcgttgaga gacatggtta
     501  tattggttac ggtggtacca ctgctagcgt gtgtagtaac tggcaagctc
     551  agttttcttc aaagaataat aattatacac acgccgctgc tggtaagact
     601  cttgtgttgc cttacaacag attagctgag cattcgaaac cgtcagccgt
     651  cgctcgcccg ttgaagtcgc agttaaacaa cgttagctca tcgcgctatc
     701  ttttgccgaa cgttgctctt aatcaaaatg cgtctgggca cgagtccgag
     751  attttaagcg aaagccctcc catcgctata gggagtccgt ccgcgtcccg
     801  taacaatagc ttcagaccgc aggtggttaa cggtctttag