Sequence of DPV Dolichos yellow mosaic virus
Dolichos yellow mosaic virus DNA-A segment, complete sequence, isolate Bangalore-1
ACC No: AM157412
Dated: 2006-10-12 | Length: 2762 | CRC: 206199096
ID AM157412; SV 1; circular; genomic DNA; STD; VRL; 2762 BP.
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AC AM157412;
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DT 12-OCT-2006 (Rel. 89, Created)
DT 12-OCT-2006 (Rel. 89, Last updated, Version 1)
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DE Dolichos yellow mosaic virus DNA-A segment, complete sequence, isolate
DE Bangalore-1
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KW AC1 gene; AC2 gene; AC3 gene; AC4 gene; AV1 gene; AV2 gene; coat protein;
KW complete segment; CP gene; REn gene; Rep gene;
KW replication enhancer protein; replication-associated protein;
KW transcriptional activator protein; TrAp gene.
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OS Dolichos yellow mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2762
RA Maruthi M.N.;
RT ;
RL Submitted (08-NOV-2005) to the EMBL/GenBank/DDBJ databases.
RL Maruthi M.N., Natural Resources Institute, University of Greenwich, Central
RL Avenue, Chatham Maritime, Kent, ME4 4TB, UNITED KINGDOM.
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RN [2]
RA Maruthi M.N., Manjunatha B., Rekha A.R., Govindappa M.R., Colvin J.,
RA Muniyappa V.;
RT "Dolichos yellow mosaic virus belongs to a distinct lineage of Old World
RT begomoviruses; its biological and molecular properties";
RL Ann. Appl. Biol. 149(2):187-195(2006).
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FH Key Location/Qualifiers
FH
FT source 1. .2762
FT /organism="Dolichos yellow mosaic virus"
FT /segment="DNA-A"
FT /specific_host="Dolichos"
FT /isolate="Bangalore-1"
FT /mol_type="genomic DNA"
FT /country="India:Karnataka state, Bangalore"
FT /virion
FT /db_xref="taxon:333968"
FT CDS 123. .410
FT /gene="AV2"
FT /product="AV2 protein"
FT /protein_id="CAJ43215.1"
FT /translation="MWDPLVNDFPDTLHGLRCMLAVKFVQELLETYPRDSNGRILLEEL
FT ISVLRCKRYAKAQFRYGVFYSKTQCTSKAQLRQPICNTDVSSSNSEHQSS"
FT CDS 283. .1056
FT /gene="AV1"
FT /gene="CP"
FT /product="coat protein"
FT /protein_id="CAJ43216.1"
FT /translation="MPKRSFDMAFSTPRPSVRRRLNFDNPSATPMSVRRTPSTSRRRQW
FT TNRPMNRKPRLYRMYRSRDVPYGCEGPCKVQSFEQRHDISHTGKVMCVSDVTRGNNLTH
FT RVGKRFCVKSVYIIGKIWMDENIKTKNHTNTVMFWLVRDRRPFGTPMDLGQVFNMYDNE
FT PSTATIKNDLRDRYQVLRKFDSTVTGGQYASREANVIKRFWRVNNYVVHNHQEAAKYEN
FT HTENALLLYMACTHASNPVYATLKIXIYFYDSISN"
FT CDS complement(1073. .1483)
FT /gene="AC3"
FT /gene="REn"
FT /product="replication enhancer protein"
FT /protein_id="CAJ43217.1"
FT /translation="MTDSRTGESITAAQLQSGVFIWELKNPLSFKILEHHEGFLFDPNQ
FT HRTKIRIMFNHGLKKALGIHKAFLDLVVYHRLTPQSGRILNVFRNFLFRFLNNLGIISM
FT NNVLRGCEYVLYDVFQRVEAVDFEYNVQYKLY"
FT CDS complement(1203. .1631)
FT /gene="AC2"
FT /gene="TrAp"
FT /product="transcriptional activator protein"
FT /protein_id="CAJ43218.1"
FT /translation="MRSSSPSNSHCSLPSIKAQHRQAKKRKTIRRKRIDLTCGCSYYLN
FT INCRNDGFTHRGIHHCSSTTEWRVYLGAKESPVFQNPGASRGVPVRSEPTQNQDPHNVQ
FT PRVEESVGDTQGILGLSSLPSIDSAIWADLECIQELPF"
FT CDS complement(1537. .2634)
FT /gene="AC1"
FT /gene="Rep"
FT /product="replication-associated protein"
FT /function="virus replication"
FT /protein_id="CAJ43219.1"
FT /translation="MRTPGFRISARNIFLTYPKCSLSKEQALEQLCRIECPSDKLFIRV
FT AQEAHQDGTMHLHALVQFKGKAQFRNARHFDLTHPHSTQIFHGNVQGAKSSSDVKSYIT
FT KDGDYVDWGTFQIDGRPARGGRQTADDAVASALNSGTVQGAMNIIKELLPHNYVFQYHN
FT LRSNLERIFAPPITVYTSFYKPTDFSQVPSVMTDWAESNVVDPSWRSDPAARPRRPMSI
FT VVEGATRTGKTLWARSLGAHNYMCGHLDLSPKIFSNDAWYNVIDDVDPHYLKHFKEFMG
FT AQMDWQSNIKYGKPTQIKGGIPTIFLCNPGPRSSYKEFLDEEQNESLKEWAYKNAVFVT
FT LEQPLFSTEHQGTASTGEEAQNDSA"
FT CDS complement(2235. .2480)
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="CAJ43220.1"
FT /translation="MGLCISMPSSSSRVRPSSEMPDISTLPILIAHRFSMEMSREQRAH
FT LMSNPTSPRTVTTSTGEHFRSTDDLLEEVGRQLTML"
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SQ Sequence 2762 BP; 730 A; 623 C; 621 G; 787 T; 1 other;
am157412 Length: 2762 12-OCT-2006 Type: N Check: 9376 ..
1 accggatggc cgcccgcccg ccacgtgtct caatcctgac gctccgtgga
51 gtcttattta gcgcacccgg atttcaaatt tcactataaa acttggtcga
101 caagttttac acatctatct aaatgtggga cccattggtc aatgattttc
151 ctgacacact gcatggattg cggtgtatgt tagctgtgaa atttgtgcag
201 gaattattgg agacctatcc gcgtgactcg aatggacgca tcctattgga
251 ggagctaatt tcggtgttgc gttgtaagcg ttatgccaaa gcgcagtttc
301 gatatggcgt tttctactcc aagacccagt gtacgtcgaa ggctcaactt
351 cgacaaccca tctgcaacac cgatgtcagt tcgtcgaact ccgagcacca
401 gtcgtcgtag acaatggacc aatcgcccca tgaatcgcaa accgcgtcta
451 tatcgtatgt atcgctcacg cgatgtacca tatgggtgcg agggaccatg
501 taaagttcaa tcatttgaac aacggcatga tatcagtcat actggtaagg
551 tcatgtgtgt ttccgatgtc actagaggaa acaaccttac tcatcgtgtt
601 ggtaaacgat tttgtgttaa atctgtttac attattggca aaatttggat
651 ggacgaaaac atcaagacaa aaaaccatac aaacacagtc atgttttggc
701 tagttcgtga tcgacgtcct tttggaacgc ctatggattt gggtcaagtg
751 ttcaacatgt atgataatga accctcgacc gccactatca aaaacgacct
801 acgtgatcgt taccaagtct tacgtaagtt cgattcaact gttaccggag
851 gtcaatatgc gtcgagggaa gcaaatgtca tcaagagatt ttggcgtgtc
901 aacaattatg tggtccataa ccaccaagaa gctgctaagt atgagaatca
951 tactgaaaac gcattattat tgtatatggc atgtactcat gcctcaaatc
1001 cagtgtatgc aacattaaag atcagnatct acttctatga ttcgatctca
1051 aattaataaa atctctgttt tattaatata acttatattg cacattatat
1101 tcgaagtcga ctgcttctac tctttgaaat acatcgtaca acacatattc
1151 gcaaccgcgt aatacattgt tcatcgaaat aattcctaaa ttatttaaaa
1201 atctaaaaag gaagttcctg aatacattca agatccgccc agattgcgga
1251 gtcaatcgat ggtaaactac taagtccaag aatgccttgt gtatccccaa
1301 cgctttcttc aacccgtggt tgaacattat gcggatcttg gttctgtgtt
1351 ggttcggatc gaacaggaac ccctcgtgat gctccaggat tttgaaagac
1401 aggggattct ttagctccca gataaacacg ccactctgta gttgagctgc
1451 agtgatggat tcccctgtgc gtgaatccgt cattccggca gttgatattt
1501 aggtaatacg aacagccaca ggtcagatcg attcgcttac gccgaatcgt
1551 tttgcgcttc ttcgcctgtc gatgctgtgc cttgatgctc ggtagagaac
1601 aatggctgtt cgagggtgac gaagaccgca ttcttgtaag cccactcctt
1651 caatgattcg ttttgttcct cgtcaaggaa ctctttatag gacgaacgtg
1701 gtcctggatt gcaaaggaag atggtgggaa tcccaccttt aatctgagtg
1751 ggcttaccgt atttgatatt gctttgccag tccatctggg cccccatgaa
1801 ctctttaaaa tgctttaaat aatgcggatc aacgtcatca atgacgttat
1851 accaagcatc gttggaaaag atctttggac taagatccag atgtccacac
1901 atgtaattat gggcccctaa tgatcgggcc cacaatgtct tccccgttct
1951 tgttgctcct tcaacaacta tgctcatcgg tcttctcggc cgcgcagcgg
2001 ggtcgctcct ccacgacgga tcaacaacgt tactttctgc ccagtctgtc
2051 ataacagacg gcacttgact aaagtcggtt ggcttgtaaa acgacgtgta
2101 aactgtaata ggaggagcga agatgcgttc aaggttagat ctcagattgt
2151 ggtactggaa cacataattg tgtggaagta attctttaat aatgttcata
2201 gcaccttgaa ccgtaccgga attcaacgcc gatgctacag catcgtcagc
2251 tgtctgccga cctcctctag caggtcgtcc gtcgatctga aatgttcccc
2301 agtcgacgta gtcaccgtcc ttggtgatgt aggatttgac atcagatgag
2351 ctctttgctc cctggacatt tccatggaaa atctgtgtgc tatgaggatg
2401 ggtaaggtcg aaatgtctgg catttcggaa ctgggcctta cccttgaact
2451 ggacgagggc atggagatgc atagtcccat cttgatgtgc ttcttgtgcg
2501 actctgatga acaatttatc cgacggacac tcgatgcgac agagctgttc
2551 gagagcttgt tctttcgaca acgaacattt ggggtaggtc agaaatatat
2601 ttctggcaga aatgcggaag cctggagttc tcatctttta aatgagagaa
2651 ggtgccacgt catcggtgta tcggtgtcgc ttcaaagttc ccagaattgg
2701 tgtcattggt gtcgcatata taggggtctc taataagggg tacggccatc
2751 cgcaataata tt