Sequence of DPV Vernonia yellow vein virus
Vernonia yellow vein virus segment DNA-A, complete viral segment
ACC No: AM182232
Dated: 2010-06-28 | Length: 2745 | CRC: -698276523
ID AM182232; SV 2; circular; genomic DNA; STD; VRL; 2745 BP.
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AC AM182232;
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DT 18-JAN-2006 (Rel. 86, Created)
DT 28-JUN-2010 (Rel. 105, Last updated, Version 3)
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DE Vernonia yellow vein virus segment DNA-A, complete viral segment
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KW ac1 gene; ac2 gene; ac3 gene; ac4 gene; AC4 protein; ac5 gene; AC5 protein;
KW AV1 gene; av2 gene; AV2 protein; coat protein; complete viral segment;
KW replication enhancer protein; replication initiator protein;
KW transactivator protein.
XX
OS Vernonia yellow vein virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RC revised by [3]
RA Usha R.;
RT ;
RL Submitted (17-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL Usha R., Plant Biotechnology, Madurai Kamaraj University, School of
RL Biotechnology, Tamil Nadu, 625021, INDIA.
XX
RN [2]
RA Packialakshmi R.M., Srivastava N., Girish K.R., Usha R.;
RT "Molecular characterization of a distinct begomovirus species from Vernonia
RT cinerea and its associated DNA-beta using the bacteriophage Phi 29 DNA
RT polymerase";
RL Virus Genes 41(1):135-143(2010).
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RN [3]
RP 1-2745
RA Usha R.;
RT ;
RL Submitted (22-JAN-2010) to the EMBL/GenBank/DDBJ databases.
RL Usha R., Plant Biotechnology, Madurai Kamaraj University, School of
RL Biotechnology, Tamil Nadu, 625021, INDIA.
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FH Key Location/Qualifiers
FH
FT source 1. .2745
FT /organism="Vernonia yellow vein virus"
FT /segment="DNA-A"
FT /host="Vernonia cinerea"
FT /mol_type="genomic DNA"
FT /country="India:Madurai"
FT /isolation_source="diseased leaves"
FT /tissue_type="infected leaves"
FT /db_xref="taxon:367061"
FT CDS 129. .476
FT /gene="av2"
FT /product="AV2 protein"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q2MCS8"
FT /protein_id="CAJ57817.1"
FT /translation="MWDPLLHEFPETVHGLRCMLAVKYLSAVADTYSPDTLGFDLLRDL
FT ICVVRARNYVEATSRYSDFNSRIQSTSSSEFRQPLFSTCCCPHCPRHQKTNVDQQAHVP
FT KAQALSDVQKQ"
FT CDS 289. .1059
FT /gene="av1"
FT /product="coat protein"
FT /db_xref="GOA:Q2MCS7"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q2MCS7"
FT /protein_id="CAJ57818.1"
FT /translation="MSKRPADIVISTPVSKVRRRLNFDSPYSRRAAVPTVRVTKRQMWT
FT NRPMYRKPRLYRMYKSNDVPKGCEGPCKVQSFEQRHDIAHTGKVICVSDVTRGNGLTHR
FT VGKRFCVKSMYVLGKVWMDENIKTKNHTNTVMFYIVRDRRPFGTPMDFGQVFNMYDNEP
FT STATVKNDLRDRYQVLRKFYATVTGGQYASKEQAMVQKFMRLNNYVVYNHQEAAKYDNH
FT TENALLLYMACTHASNPVYATLKIRIYFYDSVSN"
FT CDS complement(319. .993)
FT /gene="ac5"
FT /product="AC5 protein"
FT /db_xref="InterPro:IPR006892"
FT /db_xref="InterPro:IPR013671"
FT /db_xref="UniProtKB/TrEMBL:Q2MCS6"
FT /protein_id="CAJ57819.2"
FT /translation="MSTCHIQQQSVLSMVIILSSLLMIVNNIIIQPHEFLNHCLLLACI
FT LTTSNSCVELPQYLIPIPQIIFDSSSARLIIIHVKNLTKIHGSPKRTTISYNIEHNCVR
FT MVLRLDVFIHPHLTKHIHGLNTKTFTNPMSQPITTCDIRDTYHLASMSNIMTLFKRLHL
FT TWAFTALWYIIAFVHPIEPGLSVHGPVGPHLSFGDADSGDSSTSRIGAVEIQTTTYFGY
FT GS"
FT CDS complement(1056. .1460)
FT /gene="ac3"
FT /product="replication enhancer protein"
FT /function="replication enhancer"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:Q2MCS5"
FT /protein_id="CAJ57820.2"
FT /translation="MDSHTGEPITAAQAQNGVFIWEVPNPLYFKILKHLQRPFNMNKDI
FT IEVRIQFNHYLRKALGLRKCYLTFTIWSHLRPATSHFLRVFKTQVLKYLDSLGVISLNL
FT VIRAVDHVLHNVLSGTIYVKQFEIIKFNFY"
FT CDS complement(1201. .1608)
FT /gene="ac2"
FT /product="transactivator protein"
FT /function="transactivation"
FT /db_xref="GOA:Q2MCS4"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:Q2MCS4"
FT /protein_id="CAJ57821.2"
FT /translation="MQPSSPYTSRCSQVPIKALHRAAKARPIKRKRIDLPCGCSIYRHI
FT NCHNHGFTHRGTHHCSSSSEWRIYLGSSKSPIFQDPKAPTTTIQHEQGHHRSQDPIQPL
FT PEESTGTTQMLSDFHHLESLTSSDIAFLKSI"
FT CDS complement(1547. .2596)
FT /gene="ac1"
FT /product="replication initiator protein"
FT /function="initiation of replication"
FT /db_xref="GOA:Q2MCS3"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q2MCS3"
FT /protein_id="CAJ57822.2"
FT /translation="MAPPKRFLINAKNYFLTYPHCSLTKEETLSQIKNLETPTNKLFIR
FT VCRELHEDGTPHLHVLIQFEGKFKCQNNRFFDLQTPSRSAHFHPNIQGAKSSSDVKSYM
FT EEDGDILDFGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDFVLQFH
FT NLNSNLDRIFTPPLEIYISPFLSSTFNNVPEEMEEWASENISDAGLRPLRPLSIIIEGE
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHYKEFMGAQREW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNKALRDWSLKNATFLTLYEPL
FT FSSANQSPT"
FT CDS complement(2146. .2439)
FT /gene="ac4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:Q2MCS2"
FT /protein_id="CAJ57823.1"
FT /translation="MGLLTCMSSSSSKANSNAKITDSSTYKPQAGQHISIRTFRELKAQ
FT AMSNPTWKKTETSLTLEFSKSMEDQLEEVANLPTTHMPRQSIQGPKLRPSIY"
XX
SQ Sequence 2745 BP; 673 A; 511 C; 646 G; 915 T; 0 other;
am182232 Length: 2745 28-JUN-2010 Type: N Check: 5085 ..
1 accggatggc cgcgaaattt tttttgggcc ccaccacgtg ctctgtcttt
51 aaatcttgtc cgctcctcaa agtcttatta gttcgtggtc ccctataaag
101 attggtctcc aagttttcat tttcaaaaat gtgggatccc cttttgcatg
151 agttccctga aaccgtacat ggtcttcgtt gtatgctagc ggttaagtat
201 ttatccgccg tggcagatac gtattctcct gataccttag gtttcgatct
251 tcttagggat ttaatttgtg tcgttagggc tcgtaattat gtcgaagcga
301 ccagcagata tagtgatttc aactcccgta tccaaagtac gtcgtcgtct
351 gaatttcgac agcccctatt ctcgacgtgc tgctgtcccc actgtccgcg
401 tcaccaaaag acaaatgtgg accaacaggc ccatgtaccg aaagcccagg
451 ctctatcgga tgtacaaaag caatgatgta ccaaagggct gtgaaggccc
501 atgtaaggtg cagtcgtttg aacagcgtca tgatattgct catactggca
551 aggtgatatg tgtctcggat gtcacacgtg gtaatgggtt gactcatagg
601 gttggtaaac gtttttgtgt taagtccatg tatgtgcttg gtaaggtgtg
651 gatggatgaa aacatcaaga cgaagaacca tacgaacaca gttatgttct
701 atattgtaag agatcgtcgt ccgtttggga ctcccatgga ttttggtcag
751 gtttttaaca tgtatgataa tgagcctagc actgctactg tcaaaaatga
801 tttgagggat cggtatcagg tattgcggaa gttctacgca actgttactg
851 gtggtcagta tgcaagcaag gagcaggcaa tggttcagaa attcatgagg
901 ctgaataatt atgttgttta caatcatcag gaggctgcta agtatgataa
951 ccatactgag aacgctttgt tgttgtatat ggcatgtact catgcttcta
1001 atccagtgta tgctactttg aagatacgga tatattttta tgactctgta
1051 tcaaattaat aaaaattaaa ttttattatt tcgaattgtt ttacatatat
1101 tgttcctgat aatacattgt gtaatacatg atctactgct ctaattacaa
1151 gatttaaaga aattacgcct aaactatcca agtattttaa tacttgtgtc
1201 ttaaatactc ttaagaaatg cgatgtcgct ggacgtaagt gactccaaat
1251 ggtgaaagtc agataacatt tgcgtagtcc cagtgctttc ctcaggtagt
1301 ggttgaattg gatcctgact tcgatgatgt ccttgttcat gttgaatggt
1351 cgttgtaggt gctttaggat cttgaaatat aggggatttg gaacttccca
1401 gataaatacg ccattctgag cttgagctgc agtgatgggt tcccctgtgt
1451 gtgaatccat ggttgtggca gttgatgtgt ctgtatattg agcatccaca
1501 ggggaggtct atcctctttc ttttgattgg tcttgctttt gctgctctat
1551 gtagggcttt gattggcact tgagaacagc ggctcgtata gggtgaggaa
1601 ggttgcattt ttgagtgacc agtctcttaa tgctttgttt ttttcttcgt
1651 ctaggtattc tttataggat gatgttggcc ctggattgca taggaagatt
1701 gttggaatcc ctcctttaat ttgaatgggt tttccgtatt tcgtgttgct
1751 ttgccactcc ctttgggccc ccataaattc tttatagtgt tttaggtagt
1801 gggggtcaac atcgtcaatg acgttatacc acgcgtcatt gctgtatact
1851 ttcgggctta ggtccaggtg accacatagg tagttgtgtg ggcctagtga
1901 acgagcccac attgtctttc ctgtcctgct ttctccttct attattatac
1951 tgagtggtcg gagtggccgc aggccggcgt cggaaatatt ttccgatgcc
2001 cactcttcca tttcctctgg tacattatta aaagtagaag ataaaaaagg
2051 cgaaatataa atctctaatg gaggtgtaaa aatcctatct aaattactat
2101 ttaaattatg aaactgtaat acaaaatctt tgggagcttt ctcccttagt
2151 atattgaggg ccgcagcttt ggaccctgaa ttgattgcct cggcatatgc
2201 gtcgttggca gattggcaac ctcctctagc tgatcttcca tcgatttgga
2251 aaactccaaa gtcaaggatg tctccgtctt cttccatgta ggatttgaca
2301 tcgcttgagc ttttagctcc ctgaatgttc ggatggaaat gtgctgacct
2351 gcttggggtt tgtaggtcga agaatctgtt attttggcat ttgaatttgc
2401 cttcgaactg gatgaggaca tgcaggtgag gagtcccatc ttcgtgtagt
2451 tctctgcaaa ctctgatgaa cagtttattt gtaggtgttt ctaggttttt
2501 aatttgggaa agggtttctt cttttgtgag tgagcagtga gggtatgtga
2551 ggaaatagtt cttggcattt attaagaacc gttttggggg tgccatgttg
2601 acttggtcaa tcgggtcctc tcaaactatc gtatgcaatc ggggaatggg
2651 tctcaatata taggtgagga cctaaatggc atggattgta atttcggaat
2701 gaaattcaaa tttcaaattg gtaaagcggc catccgtcta atatt