Sequence of DPV Cucumber mosaic virus
Cucumber mosaic virus (strain Pl-1) genomic RNA segment RNA2, strain Pl-1, complete sequence
ACC No: AM183115
Dated: 2007-03-12 | Length: 3043 | CRC: -2083786741
ID AM183115; SV 1; linear; genomic RNA; STD; VRL; 3043 BP.
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AC AM183115;
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DT 23-JAN-2006 (Rel. 86, Created)
DT 12-MAR-2007 (Rel. 91, Last updated, Version 2)
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DE Cucumber mosaic virus (strain Pl-1) genomic RNA segment RNA2, strain Pl-1,
DE complete sequence
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KW 2a gene; 2b gene; 2b protein; RNA-dependent RNA polymerase.
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OS Cucumber mosaic virus (strain Pl-1)
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC Cucumovirus.
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RN [1]
RP 1-3043
RA Lopez C.;
RT ;
RL Submitted (20-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL Lopez C., COMAV, Universidad Politecnica de Valencia, Camino de Vera 14,
RL 46022 Valencia, SPAIN.
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RN [2]
RA Lopez C., Aramburu J., Galipienso L., Nuez F.;
RT "Characterisation of several heterogeneous species of defective RNAs
RT derived from RNA 3 of cucumber mosaic virus";
RL Arch. Virol. 152(3):621-627(2007).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3043
FT /organism="Cucumber mosaic virus (strain Pl-1)"
FT /segment="RNA2"
FT /specific_host="tomato"
FT /strain="Pl-1"
FT /mol_type="genomic RNA"
FT /country="Spain:Barcelona"
FT /virion
FT /db_xref="taxon:367797"
FT CDS 79. .2652
FT /gene="2a"
FT /product="RNA-dependent RNA polymerase"
FT /db_xref="GOA:Q2MCL2"
FT /db_xref="InterPro:IPR001788"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:Q2MCL2"
FT /protein_id="CAJ65576.1"
FT /translation="MAFSAPTFSLANLLNGSYGVDTPEEVERVRSEQREEAAAACRNYR
FT PLPAVDVSESVTEDAHSLRTPDGAPSEEVSVEFVTYGAEDYLEKSDDELSVAFETMVKP
FT MRIGQLWCPAFNKCSFISSIAMARALLLAPRTSHRTMKGFEDLVAAIYTKSDFYYDEEC
FT EADDIQIDVSSRDVPGYSFEPWSRTSGFEPPPICEACDMIMYQCPCFDFNALKKSCAER
FT TFADDYVIEGLDGVVDNATLLSNLGPFLVPVKCQYEKCPTPTVAIPPSLNRATDRVDIN
FT LVQSICDSTLPTHSNYDDSFHQVFVESADYSIDLDHVRLRQSDLIAKIPDSGHMIPVLS
FT TGSGHKRVGTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAERFFISYINGNSLASSN
FT FVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPVP
FT ATITYHKKGITSQFSPLFTALFERFQRCLRERIILPVGKISSLEMAGFDVKNKHCLEID
FT LSKFDKSQGEFHLMIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGVGMPISFQRRT
FT GDAFTYFGNTIVTMAEFAWCYDTDQFEKLLFSGDDSLGFSVLPPVGDPSKFTTLFNMEA
FT KVMEPAVPYICSKFLLSDEFGNTFSVPDPLREVQRLGTKKIPYSDNDEFLFAHFMSFVD
FT RLKFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYKELYYSDRRQC
FT ELINSFSCVELRIERSSSTKQRKKKDGIERRRSDKRRTPTGSYGGGEKTETKVSHEEST
FT GTRSQKSQREGAFKSQIVPLPTILSGGWSGTDRAPPCEHGGIIRI"
FT CDS 2414. .2746
FT /gene="2b"
FT /product="2b protein"
FT /db_xref="InterPro:IPR004946"
FT /db_xref="UniProtKB/TrEMBL:Q2MCL1"
FT /protein_id="CAJ65577.1"
FT /translation="MELNEGAVTNVELQLARMVEVKRQRRRSHMKNRRERGHKSPSERA
FT RSNLRLFRFLPFYQVDGPELIELHHVNMVELSESEAPRLSLLVEEDHDFDDTDWFAGNE
FT WAEGSF"
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SQ Sequence 3043 BP; 755 A; 656 C; 722 G; 910 T; 0 other;
am183115 Length: 3043 12-MAR-2007 Type: N Check: 5649 ..
1 gtttatttac aagagcgtac ggttcaaccc ctgcctcccc tgtaaaactc
51 cctagatttt ctagtttctt tctttcctat ggctttctcc gcccccactt
101 tctcactagc caatcttttg aacggtagtt acggtgtcga cactcccgag
151 gaagtggaac gcgtgcgatc tgagcaacgc gaagaggctg ctgcggcctg
201 tcgtaattac aggcctttac ccgctgtgga tgtcagcgag agtgtcacag
251 aggatgcgca ttccctccga actccagatg gagctccctc tgaagaggta
301 tctgttgagt ttgttactta tggtgctgaa gattaccttg aaaaatctga
351 tgatgagctc tctgtcgctt ttgagacgat ggttaaaccc atgcgtattg
401 gacaactatg gtgccctgca tttaataagt gttcttttat ttccagcatt
451 gctatggcca gagctttgtt gttggcacct agaacatccc accgaaccat
501 gaaaggtttt gaagacctgg tcgcggctat ttacactaaa tctgatttct
551 attacgatga ggagtgtgaa gccgacgaca ttcagataga tgtctcgtct
601 cgcgatgtac ccggttattc tttcgaaccg tggtcccgaa cgtctggatt
651 tgaaccgccg cctatctgtg aggcgtgtga catgatcatg taccagtgcc
701 cgtgttttga ttttaatgct ttaaagaaat cgtgcgctga gaggactttc
751 gctgatgact atgttatcga aggtttagat ggtgttgttg acaatgcgac
801 tttattgtcg aatctgggcc cgtttttggt gcctgtgaaa tgtcaatatg
851 agaaatgtcc aacacctact gttgcgattc ctccgagttt aaatcgtgct
901 actgatcgtg ttgatatcaa tttagttcaa tccatttgtg actcgactct
951 gcccacacat agtaactacg acgactcttt ccatcaagtg tttgtcgaga
1001 gtgcagacta ttctattgat ctggatcatg ttaggcttcg gcaatctgat
1051 cttattgcga agatcccaga ttcagggcat atgataccgg ttctgagtac
1101 cgggagtggt cacaagagag taggtacgac gaaggaggtc cttacagcaa
1151 tcaagaaacg taatgctgac gttccagagc tgggtgattc cgttaatttg
1201 tccaggttga gtaaggctgt ggctgagaga ttctttattt catacatcaa
1251 tggtaactct ttagcatcca gcaattttgt taatgtcgtt agtaacttcc
1301 acgattacat ggaaaaatgg aagtcctcag gtctctcata tgatgatctt
1351 ccagatcttc acgctgagaa tttgcaattt tatgatcata tgataaaatc
1401 tgatgtgaaa cctgtggtaa gcgacacact caacattgac agaccggttc
1451 cagctactat aacgtatcat aagaaaggta taacctccca gttctcaccg
1501 ttgtttactg cgctatttga gcgtttccag agatgccttc gagaacgcat
1551 tattcttcct gtaggaaaga tttcatccct tgagatggca ggttttgatg
1601 ttaagaacaa acattgtctc gagatcgatc tgtccaaatt cgacaaatct
1651 caaggtgaat tccatttgat gattcaggaa catattttga atggtctagg
1701 gtgcccagct ccgataacta agtggtggtg cgatttccac agattctctt
1751 acattagaga ccgtagagct ggtgttggta tgcctattag tttccaaaga
1801 cgaactggtg atgcattcac ttattttggt aataccattg tcaccatggc
1851 tgaatttgcc tggtgctacg acaccgacca attcgaaaag cttttattct
1901 cgggcgatga ttctctagga ttttcagtgc ttccccctgt tggtgatccg
1951 agtaaattca caactctttt caacatggaa gcgaaggtga tggaacctgc
2001 agtaccttat atttgttcga agttcttact ctctgacgag ttcggtaaca
2051 ccttttccgt tccagatcca ttgcgcgagg ttcagcggtt aggaactaag
2101 aaaattccct attcagacaa tgatgaattc ctgtttgctc acttcatgag
2151 ctttgttgat cgattgaagt ttttggaccg aatgactcag tcttgtatcg
2201 atcagctttc actcttcttt gagttgaaat ataggaagtc tggggctgag
2251 gctgctttaa tgttaggcgc ctttaagaag tataccgcta attttcaatc
2301 ctataaggaa ctctactatt cagatcgtcg tcagtgcgaa ttgatcaatt
2351 cgtttagttg cgtagagttg aggattgagc gttcgagttc cactaagcag
2401 cgaaagaaga aagatggaat tgaacgaagg cgcagtgaca aacgtcgaac
2451 tccaactggc tcgtatggtg gaggtgaaaa gacagagacg aaggtctcac
2501 atgaagaatc gacgggaacg aggtcacaaa agtcccagcg agagggcgcg
2551 ttcaaatctc agattgttcc gcttcctacc attttatcag gtggatggtc
2601 cggaactgat agagctccac catgtgaaca tggtggaatt atccgaatct
2651 gaggcccctc gtttatcgtt actggtggaa gaagaccatg attttgacga
2701 tacggattgg ttcgctggta acgagtgggc ggaagggtcg ttttgaaaac
2751 ccccctttcc tttctccctc cggttttctg aggcgggagc tgagttggca
2801 gtattgctat aaactgtctg aagtcactaa acgttttacg gtgaacgggt
2851 tgtccatcca gctaacggct aaaatggtca gtcgtggaga aatccacgcc
2901 ggaggcttac aagtctctga gacacctttg aaaccgtctc ctgggtttct
2951 tcggaaggac ttcggtccgt gtacctctaa cacaatgtgc tagttttagg
3001 gtacgggtgt cccccgcttt gcggggtctc ttaaaggaga cca