Sequence of DPV Cymbidium mosaic virus

Cymbidium mosaic virus partial CP gene for coat protein, isolate FPo01, genomic RNA

ACC No: AM236019

Dated: 2007-03-24 | Length: 645 | CRC: -1502192604

                
ID   AM236019; SV 1; linear; genomic RNA; STD; VRL; 645 BP.
XX
AC   AM236019;
XX
DT   01-APR-2006 (Rel. 87, Created)
DT   24-MAR-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Cymbidium mosaic virus partial CP gene for coat protein, isolate FPo01,
DE   genomic RNA
XX
KW   coat protein; CP gene.
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OS   Cymbidium mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Potexvirus.
XX
RN   [1]
RP   1-645
RA   Grisoni M.;
RT   ;
RL   Submitted (10-MAR-2006) to the EMBL/GenBank/DDBJ databases.
RL   Grisoni M., UMR 53-PVBMT, Cirad, 97410, 97410 Saint Pierre, REUNION.
XX
RN   [2]
RA   Moles M., Delatte H., Farreyrol K., Grisoni M.;
RT   "Evidence that Cymbidium mosaic virus (CymMV) isolates divide into two
RT   subgroups based on nucleotide diversity of coat protein and replicase
RT   genes";
RL   Arch. Virol. 152(4):705-715(2007).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .645
FT                   /organism="Cymbidium mosaic virus"
FT                   /specific_host="Vanilla tahitensis"
FT                   /isolate="FPo01"
FT                   /mol_type="genomic RNA"
FT                   /country="French Polynesia:Raiatea"
FT                   /virion
FT                   /db_xref="taxon:12178"
FT   CDS             1. .>645
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q1XE57"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:Q1XE57"
FT                   /protein_id="CAJ84626.1"
FT                   /translation="MGEPTPTPAAAYSAADPTSSPKLADLTAIKYSPVTSSIATSEEIK
FT                   AITQLWVNNLGLPADTVGTAAIDLARAYADVGASKSATLLGVCPTKPDVRRAALAAQIF
FT                   VANVTPRQFCAYYAKVVWNLMLATNDPPANWAKAGFQEDTRFAAFDFFDAVDSTAALEP
FT                   AEWQRRPTDRERAAHSIGKYGALARQRIQNGNLITNIAEVTKGHLGSTNTLY"
XX
SQ   Sequence 645 BP; 129 A; 226 C; 150 G; 140 T; 0 other;

am236019 Length: 645  24-MAR-2007  Type: N  Check: 2827  ..

       1  atgggagagc ccactccaac tccagctgcc gcctactcag ctgctgaccc
      51  cacttcatca cccaaacttg ctgacctcac cgccatcaag tactcaccgg
     101  tcacctcatc aattgccaca tccgaagaga tcaaggccat aacccagctg
     151  tgggttaaca accttggcct ccccgccgac accgtaggta ccgcagccat
     201  tgatttggct cgtgcttacg ctgatgtcgg ggcttccaag tctgctaccc
     251  tgcttggtgt ctgtcccacg aagccagatg tccgccgcgc cgctcttgcc
     301  gcgcagattt tcgtggccaa tgttaccccc cgccagtttt gcgcttacta
     351  cgcaaaagtg gtgtggaatc tgatgctggc caccaatgat ccgcctgcca
     401  attgggccaa ggctggtttc caggaggata cccggtttgc cgccttcgac
     451  ttcttcgatg ccgtagactc cactgccgct ttggaacccg ctgaatggca
     501  acgtcgccct accgaccgtg agcgtgccgc ccactcaatc gggaagtacg
     551  gtgctctcgc ccgccagcgt atccagaacg gcaaccttat caccaacatt
     601  gccgaggtca ccaagggcca tcttggctcc actaacaccc tctat