Sequence of DPV Cymbidium mosaic virus

Cymbidium mosaic virus partial CP gene for coat protein, isolate RUN03, genomic RNA

ACC No: AM236023

Dated: 2007-03-24 | Length: 645 | CRC: 1291477420

                
ID   AM236023; SV 1; linear; genomic RNA; STD; VRL; 645 BP.
XX
AC   AM236023;
XX
DT   01-APR-2006 (Rel. 87, Created)
DT   24-MAR-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Cymbidium mosaic virus partial CP gene for coat protein, isolate RUN03,
DE   genomic RNA
XX
KW   coat protein; CP gene.
XX
OS   Cymbidium mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Potexvirus.
XX
RN   [1]
RP   1-645
RA   Grisoni M.;
RT   ;
RL   Submitted (10-MAR-2006) to the EMBL/GenBank/DDBJ databases.
RL   Grisoni M., UMR 53-PVBMT, Cirad, 97410, 97410 Saint Pierre, REUNION.
XX
RN   [2]
RA   Moles M., Delatte H., Farreyrol K., Grisoni M.;
RT   "Evidence that Cymbidium mosaic virus (CymMV) isolates divide into two
RT   subgroups based on nucleotide diversity of coat protein and replicase
RT   genes";
RL   Arch. Virol. 152(4):705-715(2007).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .645
FT                   /organism="Cymbidium mosaic virus"
FT                   /specific_host="Vanilla planifolia"
FT                   /isolate="RUN03"
FT                   /mol_type="genomic RNA"
FT                   /country="Reunion"
FT                   /virion
FT                   /db_xref="taxon:12178"
FT   CDS             1. .>645
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q1XE53"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:Q1XE53"
FT                   /protein_id="CAJ84630.1"
FT                   /translation="MEEPTPTSAATYSAADPTSAPKLADLAAIKYSPVTSSIATPEEIK
FT                   AITQLWVNNLGLPADTVGTAAIDLARAYADVGASKSATLLGFCPTKPDVRRAALAAQIF
FT                   VANVTPRQFCAYYAKVVWNLMLATNDPPANWAKAGFQEDTRFAAFDFFDAVDSTAALEP
FT                   AEWQRRPTDRERAAHSIGKYGALARQRIQNGNLITNIAEVTKGHLGSTNTLY"
XX
SQ   Sequence 645 BP; 123 A; 230 C; 155 G; 137 T; 0 other;

am236023 Length: 645  24-MAR-2007  Type: N  Check: 3859  ..

       1  atggaagagc ccactccaac ttcagctgcc acttactccg ctgccgaccc
      51  cacttctgca cccaagttgg ccgacctggc tgccattaag tactcgcctg
     101  tcacctcctc catcgccacc cccgaggaaa tcaaggccat aacccaattg
     151  tgggttaaca accttggcct ccccgctgac accgtaggta ccgcggccat
     201  tgacctggcc cgcgcctatg ctgacgtcgg ggcgtccaag agtgctaccc
     251  tgctcggttt ctgccctacg aaacctgatg tccgtcgcgc cgctcttgcc
     301  gcgcagatct tcgtggccaa cgtcaccccc cgccagtttt gcgcttacta
     351  cgcaaaggtg gtgtggaatt taatgctggc cactaacgat ccgcccgcca
     401  actgggccaa ggctggtttc caggaggata cccggtttgc cgcctttgac
     451  ttcttcgatg ctgtcgattc cactgccgcg ctggagcctg ctgaatggca
     501  gcgccgccct actgaccgcg aacgtgctgc gcactcaatt gggaagtatg
     551  gcgcccttgc ccgtcagcgt atccaaaacg gcaacctcat caccaacatt
     601  gccgaggtca ccaagggcca tcttggctcc accaacactc tctat