Sequence of DPV Cymbidium mosaic virus

Cymbidium mosaic virus partial CP gene for coat protein, isolate MDG01, genomic RNA

ACC No: AM236024

Dated: 2007-03-24 | Length: 645 | CRC: 2129509234

                
ID   AM236024; SV 1; linear; genomic RNA; STD; VRL; 645 BP.
XX
AC   AM236024;
XX
DT   01-APR-2006 (Rel. 87, Created)
DT   24-MAR-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Cymbidium mosaic virus partial CP gene for coat protein, isolate MDG01,
DE   genomic RNA
XX
KW   coat protein; CP gene.
XX
OS   Cymbidium mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Potexvirus.
XX
RN   [1]
RP   1-645
RA   Grisoni M.;
RT   ;
RL   Submitted (10-MAR-2006) to the EMBL/GenBank/DDBJ databases.
RL   Grisoni M., UMR 53-PVBMT, Cirad, 97410, 97410 Saint Pierre, REUNION.
XX
RN   [2]
RA   Moles M., Delatte H., Farreyrol K., Grisoni M.;
RT   "Evidence that Cymbidium mosaic virus (CymMV) isolates divide into two
RT   subgroups based on nucleotide diversity of coat protein and replicase
RT   genes";
RL   Arch. Virol. 152(4):705-715(2007).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .645
FT                   /organism="Cymbidium mosaic virus"
FT                   /specific_host="Vanilla planifolia"
FT                   /isolate="MDG01"
FT                   /mol_type="genomic RNA"
FT                   /country="Madagascar:Vohemar"
FT                   /virion
FT                   /db_xref="taxon:12178"
FT   CDS             1. .>645
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q1XE52"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:Q1XE52"
FT                   /protein_id="CAJ84631.1"
FT                   /translation="MGEPTPTPVATYSAADPTSAPKLADLAAIKYSPVTSSIATPEEIK
FT                   AITQLWVNNLGLPADTVGTAAIDLARAYADVGASKSATLLGFCPTKPDVRRAALAAQIF
FT                   VANVTPRQFCAYYAKVVWNLMLATNDPPANWAKAGFQEDTRFAAFDFFDAVDSTAALEP
FT                   AEWQRRPTDRERAAHSIGKYGALARQRIQNGNLITNIAEVTKGHLGSTNTLY"
XX
SQ   Sequence 645 BP; 126 A; 225 C; 152 G; 142 T; 0 other;

am236024 Length: 645  24-MAR-2007  Type: N  Check: 5070  ..

       1  atgggagagc ccactccaac tccagttgcc acttactccg ctgccgaccc
      51  cacttctgca cctaagttgg ccgacttggc tgccattaag tactcacctg
     101  tcacctcctc catcgccacc cccgaagaaa tcaaggccat aactcaattg
     151  tgggttaaca accttggcct acccgctgac actgtaggta ccgcggccat
     201  tgacctggcc cgcgcctacg ctgatgtcgg ggcgtccaag agcgctaccc
     251  tgctcggttt ctgccctacg aaacctgatg tccgtcgtgc cgctcttgcc
     301  gcgcagatct tcgtggccaa cgtcaccccc cgccagtttt gcgcttacta
     351  cgcaaaagtg gtgtggaatc tgatgctggc cactaatgat ccgcccgcca
     401  actgggccaa agctggtttc caggaggata cccgttttgc cgcctttgac
     451  ttcttcgatg ccgtcgattc cactgccgcg ctggagcctg ctgaatggca
     501  gcgccgccct actgaccgtg aacgtgctgc gcactcgatc gggaagtacg
     551  gtgcccttgc ccgtcagcgt atccaaaacg gcaatctcat caccaacatt
     601  gccgaggtca ccaaaggcca tcttggctcc accaacactc tctat