Sequence of DPV Cymbidium mosaic virus

Cymbidium mosaic virus partial CP gene for coat protein, isolate PFo09, genomic RNA

ACC No: AM236028

Dated: 2007-03-24 | Length: 645 | CRC: -1103831201

                
ID   AM236028; SV 1; linear; genomic RNA; STD; VRL; 645 BP.
XX
AC   AM236028;
XX
DT   01-APR-2006 (Rel. 87, Created)
DT   24-MAR-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Cymbidium mosaic virus partial CP gene for coat protein, isolate PFo09,
DE   genomic RNA
XX
KW   coat protein; CP gene.
XX
OS   Cymbidium mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Potexvirus.
XX
RN   [1]
RP   1-645
RA   Grisoni M.;
RT   ;
RL   Submitted (10-MAR-2006) to the EMBL/GenBank/DDBJ databases.
RL   Grisoni M., UMR 53-PVBMT, Cirad, 97410, 97410 Saint Pierre, REUNION.
XX
RN   [2]
RA   Moles M., Delatte H., Farreyrol K., Grisoni M.;
RT   "Evidence that Cymbidium mosaic virus (CymMV) isolates divide into two
RT   subgroups based on nucleotide diversity of coat protein and replicase
RT   genes";
RL   Arch. Virol. 152(4):705-715(2007).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .645
FT                   /organism="Cymbidium mosaic virus"
FT                   /specific_host="Vanilla tahitensis"
FT                   /isolate="PFo09"
FT                   /mol_type="genomic RNA"
FT                   /country="French Polynesia:Tahiti"
FT                   /virion
FT                   /db_xref="taxon:12178"
FT   CDS             1. .>645
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q1XE48"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:Q1XE48"
FT                   /protein_id="CAJ84635.1"
FT                   /translation="MGEPTPTPTATYSAADPTSAPKLADLAAIKYSPVTSSIATPEEIK
FT                   AITQLWVNNLGLPTDTVGTAAIDLARAYADVGASKSATLLGFCPTKPDVRRAALAAQIF
FT                   VANVTPRQFCAYYAKVVWNLMLATNDPPANWAKAGFQEDTRFAAFDFFDAVDSTAALEP
FT                   AEWQRRPTDRERAAHSIGKYGALARQRIQNGNLITNIAEVTKGHLGSTNTLY"
XX
SQ   Sequence 645 BP; 125 A; 235 C; 152 G; 133 T; 0 other;

am236028 Length: 645  24-MAR-2007  Type: N  Check: 1620  ..

       1  atgggagagc ccactccaac tcccactgcc acttactccg ctgccgaccc
      51  cacttctgca cccaagttgg ccgacctggc tgccattaag tactcacctg
     101  tcacctcctc tatcgccacc cccgaagaaa tcaaggccat aacccaattg
     151  tgggttaaca accttggcct ccccactgac accgtaggta ccgcggccat
     201  tgacctggcc cgcgcctacg ctgacgtcgg ggcgtccaag agtgctaccc
     251  tgctcggttt ctgccctaca aaacctgatg tccgtcgcgc cgctcttgcc
     301  gcgcagatct tcgtggccaa cgtcaccccc cgccagtttt gcgcttacta
     351  cgcaaaagtg gtgtggaatc tgatgctggc cactaacgat ccgcccgcca
     401  actgggccaa ggctggtttc caggaggata cccggtttgc cgcctttgac
     451  ttcttcgatg ccgtcgattc cactgccgcg ctggagcctg ctgaatggca
     501  gcgccgccct actgaccgtg aacgtgctgc gcactcgatc gggaagtacg
     551  gcgcccttgc ccgtcagcgt atccaaaacg gcaacctcat caccaacatt
     601  gccgaggtca ccaagggcca tcttggctcc accaacactc tctat