Sequence of DPV Squash leaf curl China virus
Squash leaf curl China virus - [Cucurbita pepo: Lahore] AV2 gene, CP gene, AC1 gene, TrAP gene, ReN gene, AC4 gene and AC5 gene, clone CPoAL4(3)
ACC No: AM286794
Dated: 2009-01-10 | Length: 2756 | CRC: 670992280
ID AM286794; SV 1; circular; genomic DNA; STD; VRL; 2756 BP.
XX
AC AM286794;
XX
DT 10-JAN-2009 (Rel. 98, Created)
DT 10-JAN-2009 (Rel. 98, Last updated, Version 1)
XX
DE Squash leaf curl China virus - [Cucurbita pepo: Lahore] AV2 gene, CP gene,
DE AC1 gene, TrAP gene, ReN gene, AC4 gene and AC5 gene, clone CPoAL4(3)
XX
KW AC1 gene; AC4 gene; AC4 protein; AC5 gene; AC5 protein; AV2 gene;
KW coat protein; CP gene; pre-coat protein; ReN gene; replication enhancer;
KW replication initiation protein; transcriptional activator; TrAP gene.
XX
OS Squash leaf curl China virus - [Cucurbita pepo: Lahore]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2756
RA Tahir M.;
RT ;
RL Submitted (11-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL Tahir M., School of Biological Sciences, University of the Punjab, School
RL of Biological Sciences, University of the Punjab, New Campus, Lahore,
RL PAKISTAN.
XX
RN [2]
RA Tahir M., Haider M.S., Briddon R.W.;
RT "Diversity of begomoviruses in Pakistan";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2756
FT /organism="Squash leaf curl China virus - [Cucurbita pepo:
FT Lahore]"
FT /host="Cucurbita pepo"
FT /mol_type="genomic DNA"
FT /country="Pakistan:Lahore"
FT /isolation_source="leaf"
FT /collected_by="Muhammad Tahir"
FT /collection_date="20-Jun-2005"
FT /clone="CPoAL4(3)"
FT /db_xref="taxon:393625"
FT CDS 121. .459
FT /gene="AV2"
FT /product="pre-coat protein"
FT /protein_id="CAL18278.1"
FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLLEIEKNYSPDTVGYDLVRDL
FT ILVLRAKNYGEATSRYHHFNARIEGTPTSELRQPLWSSCRCPHCPRHKSKGMDQQADEQ
FT KTQNVQNV"
FT CDS 281. .1051
FT /gene="CP"
FT /product="coat protein"
FT /protein_id="CAL18279.1"
FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDVNIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVGYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT CDS complement(311. .796)
FT /gene="AC5"
FT /product="AC5 protein"
FT /protein_id="CAL18280.1"
FT /translation="MHILHCCCARFIVKHVKNFPKILGRSCRTTITNQKKHDTVSMVFS
FT LDVYIHPYLPQHIDGFHTKSLPYAMCESGSSCNITNTHDLANMRDIVPRFKGLHLTRAF
FT TAPWHVGTSIHSVHSGFSVHRPVGPCLCFCDAGNGDNGTSSIGAVEVQTSAYLRCGR"
FT CDS complement(1048. .1458)
FT /gene="ReN"
FT /product="replication enhancer"
FT /protein_id="CAL18281.1"
FT /translation="MITDSRTGEYITADRAENGVYIWEVPNPLYFKIIKHDIRPCLVEH
FT DIIKVHIMFNHNLRKALGLHKCVLMFQIWTGLRPPTGIFLRVFKTQVLKYLDMLGVIGI
FT NNVLKAVYHVLDNVLEKTIDVWTTYDVKLNIY"
FT CDS complement(1193. .1597)
FT /gene="TrAP"
FT /product="transcriptional activator"
FT /protein_id="CAL18282.1"
FT /translation="MQSSSQSKNHSIPVAKESLHPKKKKNIRRRRIDLPCGCSYYMSID
FT CHDHGFTHRGVHHCGSSREWRVYLGSSKSPIFQNNKTRYQTVSSRTRHNQSAYNVQPQP
FT AESTGTSQMCSNVPNLDGLTPSDWDFLESL"
FT CDS complement(1500. .2603)
FT /gene="AC1"
FT /product="replication initiation protein"
FT /function="replication intiation"
FT /protein_id="CAL18283.1"
FT /translation="MAPPRHFKVNAKNYFLTYPKCSLTKEEALSQLKTLETPTSKKYIK
FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSKSRSAHFHPNIQGAKSASDVKQYI
FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAKAINTGNKEDALKVLKELAPKDYVLQFH
FT NMNSNLDRIFPPQAEVYISPFSVSSFDRVPQELVDWVSSNLRCSAARPFSAALPIRPIG
FT LVLEGDSRTGKTAWARSLGPHNYLCGHIDLSPRVYNNDAWYNVIDDVDPHYLKHFKEFM
FT GAQRDWQRNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWALKNAIFI
FT TIEEPLYSGRERIASSEEEEEHQAQTN"
FT CDS complement(2270. .2446)
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="CAL18284.1"
FT /translation="MGLRISTFLSSSKASFSAKITDSSTWCPKVGQHISIRTFRELNRH
FT RTSNNTSTKTVTY"
XX
SQ Sequence 2756 BP; 746 A; 586 C; 606 G; 818 T; 0 other;
am286794 Length: 2756 10-JAN-2009 Type: N Check: 8502 ..
1 accgaatggc cgcccgattt ttttaggtgg gtcctcaacc aatgaaatgc
51 acgctacatg gcttatttag tgtgtgggga ccaataaata gacttgctca
101 cgaagtttgt atccacaaac atgtgggatc cattactgca cgaatttcct
151 gaaagcgttc atggtctacg gtgcatgcta gctgtaaaat atcttctaga
201 gatagaaaag aattattcac cagacacagt cggctacgat cttgtgcgag
251 atctcatcct tgttcttcga gcaaagaact atggcgaagc gaccagcaga
301 tatcatcatt tcaacgcccg catcgaaggt acgccgacgt ctgaacttcg
351 acagccccta tggagctcgt gccgttgtcc ccattgcccg cgtcacaaaa
401 gcaaaggcat ggaccaacag gccgatgaac agaaaaccca gaatgtacag
451 aatgtataga agtcccgacg tgccaagggg ctgtgaaggc ccttgtaagg
501 tgcagtcctt tgaatctagg cacgatgtct ctcatattgg caaggtcatg
551 tgtgttagtg atgttacacg aggaaccgga ctcacacatc gcgtagggaa
601 gcgattttgt gtgaaatccg tctatgtgct ggggaagata tggatggatg
651 taaacatcaa gactaaaaac catactaaca gtgtcatgtt ttttttggtt
701 cgtgatcgtc gtcctacagg atctccccaa gattttgggg aagtttttaa
751 catgtttgac aatgaaccga gcacagcaac agtgaagaat atgcatcgtg
801 atcgttatca agtcttacgg aagtggcatg cgactgtgac gggaggaaca
851 tatgcttcta gagagcaggc attagttagg aaatttgtta gggtcaataa
901 ttatgttggt tacaatcaac aagaggccgg caagtatgag aatcatactg
951 aaaatgcatt aatgttgtat atggcctgta ctcacgcatc aaatcctgta
1001 tacgcgacat tgaaaatccg gatctatttt tatgattcgg taacaaatta
1051 atatatattc aatttcacat catatgttgt ccatacatca attgtttttt
1101 ccaagacatt atccaaaaca tgataaactg cttttaatac attattaata
1151 ccaatcaccc ccaacatatc caggtactta aggacctggg tcttaaagac
1201 tctcaagaaa atcccagtcg gagggcgtaa gcccgtccag atttggaaca
1251 ttagaacaca tttgtgaagt cccagtgctt tccgcaggtt gtggttgaac
1301 attatatgca ctttgattat gtcgtgttct actagacacg gtctgatatc
1351 gtgttttatt attttgaaat ataggggatt tggaacttcc cagatataca
1401 cgccattctc tgctcgatcc gcagtgatgt actcccctgt gcgtgaatcc
1451 gtgatcatgg caatctattg acatgtaata cgagcatccg cacggtagat
1501 caattcgtct gcgcctgatg ttcttcttct tcttcggatg aagcgattct
1551 ttcgcgaccg gaatagagtg gttcttcgat tgtgatgaag attgcattct
1601 ttaatgccca ctgtttcagt gctgcattct tctcttcatc gagatattct
1651 ttgtaactgc tgttcggtcc tttattgcag aggaagatgg tgggaattcc
1701 acctttaatc atgactggct ttccgtactt cgtgttgcgt tgccagtccc
1751 tttgggcccc catgaactct ttaaagtgct ttagatagtg gggatcaacg
1801 tcatcaatga cgttgtacca agcatcatta ttgtacactc tcgggcttag
1851 atctatgtgg ccgcacagat aattgtgcgg tcccaaagaa cgcgcccacg
1901 ctgttttgcc cgttctacta tcaccctcta aaactaaccc tatgggtcta
1951 attgggagcg cagcggaaaa aggccgcgca gcggaacacc tcaaatttga
2001 cgacacccaa tcgacgagtt cttgcggcac tctgtcgaag gatgaaactg
2051 aaaaaggaga aatatacacc tcagcttgag gtggaaaaat tcgatctaaa
2101 ttggaattca tattatggaa ttgcagaaca taatctttcg gtgctaattc
2151 tttcaatact ttcaacgcat cttccttatt tcctgtattg attgcctttg
2201 cgtacgcgtc gtttgctgtt tgttgtcctc cacgagcaga tcggccatcg
2251 atctggaaaa caccccattc taatacgtca ccgtctttgt cgatgtattg
2301 tttgacgtcc gatgccgatt tagctccctg aatgttcgga tggaaatgtg
2351 ctgaccgact tttggacacc aagtcgaaga atctgttatt tttgcactga
2401 aacttgcctt cgaactggat aagaacgtgg atatgcggag acccatcttc
2451 gtgtagctct ctgcaaattt tgatatattt cttcgaagtt ggagtctcta
2501 gggttttcaa ttgggaaagt gcctcttctt tggttagaga acactttgga
2551 tacgtgagga aatagttttt cgcatttact ttgaaatgcc taggaggagc
2601 catcaaaacg cgcgttttga ttcggggtct ctccaaaact atgttatatt
2651 ggtgtatgga gtctcatata tactttggac accaaatggc aaaatggtaa
2701 ttatggaaat aattacttta attcaaaatg actaaagcgg ccattcgtat
2751 aatatt