Sequence of DPV Cucumber mosaic virus

Cucumber mosaic virus CP gene for coat protein, specific host Tagetes erecta

ACC No: AM396983

Dated: 2006-09-25 | Length: 657 | CRC: -1055958181

                
ID   AM396983; SV 1; linear; genomic RNA; STD; VRL; 657 BP.
XX
AC   AM396983;
XX
DT   25-SEP-2006 (Rel. 89, Created)
DT   25-SEP-2006 (Rel. 89, Last updated, Version 1)
XX
DE   Cucumber mosaic virus CP gene for coat protein, specific host Tagetes
DE   erecta
XX
KW   coat protein; CP gene.
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Cucumovirus.
XX
RN   [1]
RP   1-657
RA   Gupta R.;
RT   ;
RL   Submitted (21-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL   Gupta R., Floriculture Division, Institute of Himalayan Bioresource Tech.,
RL   P.O. Box#6, IHBT, Palampur, Distt. Kangra, Himachal Pradesh, 176 061,
RL   INDIA.
XX
RN   [2]
RA   Gupta R., Hallan V., Verma R.R., Zaidi A.A.;
RT   "Variability studies of Cucumber mosaic virus infecting various ornamental
RT   plants in India";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .657
FT                   /organism="Cucumber mosaic virus"
FT                   /specific_host="Tagetes erecta"
FT                   /lab_host="Cucumis sativus"
FT                   /isolate="Indian"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Palampur"
FT                   /collected_by="Raksha Gupta"
FT                   /virion
FT                   /db_xref="taxon:12305"
FT   CDS             1. .657
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /function="capsid formation"
FT                   /protein_id="CAL48248.1"
FT                   /translation="MDKSESTSASRTSRRRRPRRGSRSASGADAGLRALTQQMLRLNKT
FT                   LAIGRPTLNHPTFVGSESCKPGYTFTSITLKPPGIEKGSYFGRRLSLPDSVTDYDKKLV
FT                   SRIQIRINPLPKFDSTVWVTVRKVPSSSDLSVAAISAMFGDGNSPVLVYQYAASGVQAN
FT                   NKLLYDLSEMRADIGDMRKYAVLVYSKDGKLEKDEIVLHVDVEHQRIPISRSLPV"
XX
SQ   Sequence 657 BP; 154 A; 161 C; 156 G; 186 T; 0 other;

am396983 Length: 657  25-SEP-2006  Type: N  Check: 8766  ..

       1  atggacaaat ctgaatcaac cagtgctagt agaacctccc ggcgtcgtcg
      51  cccgcgtaga ggttctcggt ccgcttctgg tgcggatgca gggttgcgtg
     101  ccttgactca gcagatgctg agactcaata aaaccctcgc cattggtcgt
     151  cccactctta accacccaac cttcgtgggt agtgaaagtt gtaaacccgg
     201  ttacactttc acatctatta ccctgaaacc gcctggaatt gagaaaggtt
     251  catattttgg tagaaggttg tctttgccag attcagtcac ggactatgat
     301  aagaagcttg tttcgcgcat tcaaatcagg attaatcctt tgccgaaatt
     351  tgattctacc gtgtgggtta cagttcggaa agtaccttca tcatccgatc
     401  tttccgtcgc cgccatctct gctatgtttg gcgatggtaa ttcaccggtt
     451  ttggtttatc agtatgctgc gtccggagtt caggccaaca ataagttact
     501  ttatgacctg tccgagatgc gtgctgatat cggcgacatg cgtaagtacg
     551  ccgtcctggt ttattcgaaa gacggtaaac tagagaagga cgagattgta
     601  cttcatgtcg acgtcgagca tcaacgaatt cctatctctc ggagtctccc
     651  agtctag