Sequence of DPV Rice stripe virus

Rice Stripe Virus partial segment 3 (ns3 gene), genomic RNA, isolate JS-YM

ACC No: AM397833

Dated: 2008-04-01 | Length: 636 | CRC: -1309664595

                
ID   AM397833; SV 1; linear; genomic RNA; STD; VRL; 636 BP.
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AC   AM397833;
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DT   01-SEP-2006 (Rel. 89, Created)
DT   01-APR-2008 (Rel. 95, Last updated, Version 2)
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DE   Rice Stripe Virus partial segment 3 (ns3 gene), genomic RNA, isolate JS-YM
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KW   ns3 gene; NS3 protein.
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OS   Rice stripe virus
OC   Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN   [1]
RP   1-636
RA   Zhou X.P.;
RT   ;
RL   Submitted (31-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL   Zhou X.P., Zhejiang University, Institute of Biotechnology, No. 268.
RL   Kaixuan Road, Hangzhou, Zhejiang, 310029, CHINA.
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RN   [2]
RA   Xiong R., Cheng Z.B., Wu J.X., Zhou Y.J., Zhou T., Zhou X.P.;
RT   "First report of an outbreak of Rice stripe virus on wheat in China";
RL   Plant Pathol. 57:397-397(2008).
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FH   Key             Location/Qualifiers
FH
FT   source          1. .636
FT                   /organism="Rice stripe virus"
FT                   /segment="3"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Jiangsu Province"
FT                   /lat_lon="33.62 N 119.02 E"
FT                   /isolation_source="wheat"
FT                   /collected_by="Xue-ping Zhou"
FT                   /collection_date="31-Aug-2006"
FT                   /db_xref="taxon:12331"
FT   CDS             1. .636
FT                   /gene="ns3"
FT                   /product="NS3 protein"
FT                   /db_xref="InterPro:IPR007974"
FT                   /db_xref="UniProtKB/TrEMBL:Q0JRJ6"
FT                   /protein_id="CAL37117.1"
FT                   /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD
FT                   IHSSRHPSIDEHQFLRLLHGPDDAVTLGSLLKTLIWILSHDKNLPEEYRLPTIMMSSSY
FT                   VKFFTEVKPRLPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN
FT                   RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALEPSPGSSPAVL"
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SQ   Sequence 636 BP; 172 A; 147 C; 123 G; 194 T; 0 other;

am397833 Length: 636  01-APR-2008  Type: N  Check: 9752  ..

       1  atgaacgtgt tcacatcgtc tgtaggttct gtggaatttg atcatcctct
      51  gcttttggag aatgatctga ccagtttgag cataaactgt gatgatgtcc
     101  attgttcttc aagagcctta tgttatatat atgacattca ttcatctagg
     151  cacccttcca ttgatgagca tcagtttctg aggcttcttc atggccctga
     201  tgatgctgtc actctaggct ccctcttgaa aactctgatc tggattctgt
     251  cccatgataa gaatctccca gaagagtaca gacttcctac tataatgatg
     301  tcatcctcat atgtgaagtt cttcactgaa gtgaagccaa gactcccatc
     351  aacaaattgc tggacatgca gaatgtccaa agacaatttg ccctttaccg
     401  tccctagtgt caagggattt cctccagatg cagagctcta cattgtgcca
     451  atatctgacc atgatggaaa gcctgtcaaa tttgacaata ggaagactct
     501  atatagatca cctagtaaga aaaggcataa gtatgtcatt tcttccgata
     551  aaccacctct tagtgcacgt tatgttaagt acgttgattc tagtgcacta
     601  gaaccctcac caggcagctc tccagctgtg ctgtag