Sequence of DPV Rice stripe virus

Rice Stripe Virus partial segment 3 (cp gene), genomic RNA, isolate JS-YM

ACC No: AM397834

Dated: 2008-04-01 | Length: 969 | CRC: -201603082

                
ID   AM397834; SV 1; linear; genomic RNA; STD; VRL; 969 BP.
XX
AC   AM397834;
XX
DT   01-SEP-2006 (Rel. 89, Created)
DT   01-APR-2008 (Rel. 95, Last updated, Version 2)
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DE   Rice Stripe Virus partial segment 3 (cp gene), genomic RNA, isolate JS-YM
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KW   coat protein; cp gene.
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OS   Rice stripe virus
OC   Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN   [1]
RP   1-969
RA   Zhou X.P.;
RT   ;
RL   Submitted (31-AUG-2006) to the EMBL/GenBank/DDBJ databases.
RL   Zhou X.P., Zhejiang University, Institute of Biotechnology, No. 268.
RL   Kaixuan Road, Hangzhou, Zhejiang, 310029, CHINA.
XX
RN   [2]
RA   Xiong R., Cheng Z.B., Wu J.X., Zhou Y.J., Zhou T., Zhou X.P.;
RT   "First report of an outbreak of Rice stripe virus on wheat in China";
RL   Plant Pathol. 57:397-397(2008).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .969
FT                   /organism="Rice stripe virus"
FT                   /segment="3"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Jiangsu Province"
FT                   /lat_lon="33.62 N 119.02 E"
FT                   /isolation_source="wheat"
FT                   /collected_by="Xue-ping Zhou"
FT                   /collection_date="31-Aug-2006"
FT                   /db_xref="taxon:12331"
FT   CDS             complement(1. .969)
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q8JRD1"
FT                   /db_xref="InterPro:IPR008864"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JRD1"
FT                   /protein_id="CAL37118.1"
FT                   /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG
FT                   YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT                   YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV
FT                   PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT                   TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR
FT                   LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD"
XX
SQ   Sequence 969 BP; 230 A; 253 C; 195 G; 291 T; 0 other;

am397834 Length: 969  01-APR-2008  Type: N  Check: 8186  ..

       1  ctagtcatct gcaccttctg cctcgtcctc aaagaactcc ttcaccaacc
      51  cgctgacttc agatgctgtc tttgaagtgt tctcagcaag gatcttcatc
     101  agtttgctct gttgagccaa gtacagcctt gtctgattcc cataagtgct
     151  gatcgtattg acagacatac cagccagcgc atcgaagatt gtggtcttca
     201  ctttcccatt ggtgatgaat tcatctaaga ccttctttct gccatcttcc
     251  ttcttcttgt cagccaggtt ctttgacttg cacgtgatga ccaggagacc
     301  agttgtgtac ttcatcatgt ctatgtcttt tgtcagacca cgctccttct
     351  tcttaccctc tggcatggtc tttttggtta tttggaagga gtgaatgatg
     401  tgcacaacaa acaaaatgtg acttagggag tgagttgtgc agtaaggagc
     451  tgtttcactc tccagtttga tatattgtgg aacatagtcc cacagtaagt
     501  tatcacatcc tgttagtccc aggtcagagg agtccacagc catcttaaca
     551  ccagaaattt gtctcacaac ttcatgtgag acatttggga atagctgagc
     601  cagccttcca agtgtgatag cattggcatt tgtccccacc gaggacacta
     651  tcccatacct cgacaccaag gttgaagcct ctgtgcttcc agccgccact
     701  ttcactttct tagtgacatc tctcacaaag ccagtgcctc tcacatatct
     751  catggtgatg cacatagtca tatccttggc cagtgtgtca ccacctttgt
     801  ccttcaatat gccaatcaga gttgcagcat catagcctgc atactctatc
     851  tgaccagcaa aggtcacaac atcagcctta tgagcagtca ggtaagacaa
     901  cgcatctttg gagatgtcat tgattgcctt ctgcaaatca gctagagtgg
     951  ctggcttgtt ggtacccat