Sequence of DPV Turnip mosaic virus
Turnip mosaic virus partial gene for polyprotein, isolate A28, genomic RNA
ACC No: AM410971
Dated: 2006-11-15 | Length: 1374 | CRC: 538094002
ID AM410971; SV 1; linear; genomic RNA; STD; VRL; 1374 BP.
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AC AM410971;
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DT 15-NOV-2006 (Rel. 89, Created)
DT 15-NOV-2006 (Rel. 89, Last updated, Version 1)
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DE Turnip mosaic virus partial gene for polyprotein, isolate A28, genomic RNA
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KW HC-Pro protein; helper component proteinase; polyprotein.
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OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1374
RA Shi M.L.;
RT ;
RL Submitted (09-NOV-2006) to the EMBL/GenBank/DDBJ databases.
RL Shi M.L., Zhejiang University, Institute of Biotechnology, No.268,Kaixuan
RL Road,Hangzhou, Zhejiang,310029, CHINA.
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RN [2]
RA Shi M.L., Schubert J.;
RT "Cloning and sequence analysis of HC-Pro genes of Turnip mosaic virus";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .1374
FT /organism="Turnip mosaic virus"
FT /specific_host="Brassica oleracea var. capitata"
FT /isolate="A28"
FT /mol_type="genomic RNA"
FT /country="Austria"
FT /virion
FT /db_xref="taxon:12230"
FT CDS <1. .>1374
FT /product="polyprotein"
FT /protein_id="CAL69564.1"
FT /translation="SAAGANFWKGFDRCFLAYRSDNREHTCYSGLDVTECGEVAALMCL
FT AMFPCGKITCPDCVTDSELSQGQASGPSMKHRLTQLRDVIKSSYPRFKHAVQILDRYEQ
FT SLSSANENYQDFAEIQSISDGVEKAAFPHVNKLNAILIKGATATGEEFSQATKHLLEIA
FT RYLKNRTENIEKGSLKSFRNKVSQKAHINPTLMCDNQLDKNGNFIWGERGYHAKRFFSN
FT YFEIIDPKKGYTQYETRIVPNGSRNVAIGKLIVPTNFEVLREQMRGEPVEPYPVTVECV
FT SKSQGDFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYIDLPEIEENKMYIAK
FT EGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVSELGKWPSLLDVATACYFLKVFYPDV
FT ANAELPRMLVDHKTKIIHVVDSYGSLSTGYHVLKTNTVEQLIKFTRCNLESSLKHYRVG
FT "
FT mat_peptide 1. .1374
FT /standard_name="HC-Pro protein"
FT /product="helper component proteinase"
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SQ Sequence 1374 BP; 437 A; 289 C; 324 G; 324 T; 0 other;
am410971 Length: 1374 15-NOV-2006 Type: N Check: 2367 ..
1 agtgcagctg gggccaactt ctggaaaggt ttcgatagat gctttcttgc
51 ataccgcagc gataatcgag aacacacatg ctactcggga ttagacgtca
101 ctgaatgtgg cgaagttgca gcactgatgt gtttggccat gtttccatgc
151 ggaaagataa catgccctga ctgcgttaca gacagcgaat tatcccaagg
201 acaggcgagt ggaccatcca tgaagcacag gttgacacag ttacgtgatg
251 tcattaagtc tagttatcca cggttcaaac atgcagtgca aatactagat
301 aggtatgaac aatcactgag cagtgcaaat gaaaattacc aggatttcgc
351 agaaatccag agcataagtg atggagtgga aaaagctgca ttcccacacg
401 tcaataagct gaacgcaata ttgatcaaag gagctacagc gacaggggag
451 gagttctcac aagctacgaa gcatttactc gagatagcac gatacctgaa
501 gaacagaact gagaacatcg agaagggttc gcttaagtcc ttccgcaaca
551 aggtttccca gaaagcgcac attaacccaa cactaatgtg tgacaaccag
601 ctcgacaaga acggaaattt catatggggt gagagaggtt atcacgcaaa
651 acgcttcttc agcaattact tcgagataat tgatccgaaa aagggttaca
701 ctcagtatga gacgagaata gtaccaaatg gatcgcgaaa cgttgcaatt
751 ggtaaactca tagtccctac gaactttgaa gtcttaaggg aacaaatgag
801 aggtgaaccc gtagaaccgt atccagtcac agttgagtgt gtgagcaagt
851 cacaaggcga ttttgtccat gcatgttgct gcgtgacaac agagtcaggt
901 gatccagtcc tatccgaaat taaaatgcca accaaacacc atctggtgat
951 tggcaacagc ggtgatccaa agtacattga tctccctgag atcgaagaga
1001 acaagatgta catagcgaag gaaggctatt gttacatcaa catcttctta
1051 gccatgttgg ttaatgttaa ggagtcgcaa gcaaaggaat ttacgaaagt
1101 tgttcgagat aaactagtta gcgaacttgg taaatggccc tccctactag
1151 acgtggcgac tgcttgttat ttcttgaaag tgttctatcc agacgttgct
1201 aacgctgagc taccacgcat gttagtggac cacaaaacaa agataatcca
1251 cgttgttgat tcgtatgggt cactctcaac tggatatcat gttcttaaga
1301 caaacactgt ggaacaactc atcaagttta caaggtgcaa cttggagtcg
1351 agcttgaaac actaccgcgt tggg