Sequence of DPV Turnip mosaic virus
Turnip mosaic virus partial gene for polyprotein, isolate U17, genomic RNA
ACC No: AM410987
Dated: 2006-11-15 | Length: 1374 | CRC: -1617313622
ID AM410987; SV 1; linear; genomic RNA; STD; VRL; 1374 BP.
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AC AM410987;
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DT 15-NOV-2006 (Rel. 89, Created)
DT 15-NOV-2006 (Rel. 89, Last updated, Version 1)
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DE Turnip mosaic virus partial gene for polyprotein, isolate U17, genomic RNA
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KW HC-Pro protein; helper component proteinase; polyprotein.
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OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1374
RA Shi M.L.;
RT ;
RL Submitted (09-NOV-2006) to the EMBL/GenBank/DDBJ databases.
RL Shi M.L., Zhejiang University, Institute of Biotechnology, No.268,Kaixuan
RL Road,Hangzhou, Zhejiang,310029, CHINA.
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RN [2]
RA Shi M.L., Schubert J.;
RT "Cloning and sequence analysis of HC-Pro genes of Turnip mosaic virus";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .1374
FT /organism="Turnip mosaic virus"
FT /specific_host="Brassica napus ssp. rapifera"
FT /isolate="U17"
FT /mol_type="genomic RNA"
FT /country="United Kingdom"
FT /virion
FT /db_xref="taxon:12230"
FT CDS <1. .>1374
FT /product="polyprotein"
FT /protein_id="CAL69580.1"
FT /translation="SAAGANFWKGFDRCFLAYRSDNREHTCYSGLDVTECGEVAALMCL
FT AMFPCGKITCPDCVTDSELSQGQASGPSMKHRLTQLRDVIKSSYPRFKHAVQILDRYEQ
FT SLSSANENYQDFAEIQSISDGVEKAAFPHVNKLNAILIKGATAAGEEFSQATKHLLEIA
FT RYLKNRTENIEKGSLKSFRNKVSQKAHINPTLMCDNQLDKNGNFIWGERGYHAKLFFSN
FT YFEIIDPKKGYTQYETRVVPNGSAKLAIGKLIVPTNLEVLREQMRGEPVGPYPVPVECV
FT SKSQGDFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYIDLPEIEENKMYIAK
FT EGYCYINIFLAMLVNVKESQAKEFTKVVRGKLVSELGKWPSLLDVATACYFLKVFYPDV
FT ANAELPRMLVDHKTKIIHVVDSYGSLSTGYHVLKTNTVEQLIKFTRCNLESSLKHYRVG
FT "
FT mat_peptide 1. .1374
FT /standard_name="HC-Pro protein"
FT /product="helper component proteinase"
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SQ Sequence 1374 BP; 425 A; 294 C; 329 G; 326 T; 0 other;
am410987 Length: 1374 15-NOV-2006 Type: N Check: 9962 ..
1 agtgcagccg gggccaactt ctggaaaggt ttcgacagat gctttcttgc
51 ataccgcagc gataatcgag aacacacatg ctactcggga ttggacgtca
101 ctgaatgtgg cgaagttgca gcactgatgt gcttggccat gtttccttgt
151 ggaaagataa catgccctga ctgcgttaca gacagcgaac tatcccaagg
201 acaggcgagt ggaccatcca tgaagcacag attgacacag ttacgtgatg
251 tcattaagtc tagttatcca cgatttaaac acgcagtgca aatactagat
301 aggtatgaac aatcactaag cagcgcaaat gagaactacc aggatttcgc
351 agaaatccag agcataagcg atggagtgga aaaagctgca ttcccacatg
401 tcaataagct gaacgctata ttgatcaaag gagctacagc ggcaggggag
451 gagttctcgc aagcaacgaa gcatttactc gagattgcac gatacctgaa
501 gaacagaact gagaacatcg agaagggttc gcttaaatcc ttccgcaaca
551 aggtctccca gaaggcgcat attaacccaa cactaatgtg tgacaaccag
601 ctcgacaaga atggaaattt catatggggt gaaagaggtt atcacgcaaa
651 gcttttcttt agcaattact tcgagataat tgatccgaaa aagggctaca
701 ctcagtatga aaccagggtt gtaccaaatg gatcggccaa gcttgcaatt
751 ggtaaactca tagtccctac gaatcttgaa gtcctaaggg aacagatgag
801 aggtgagccc gtgggaccgt atccagtacc agttgagtgc gtgagcaagt
851 cacaaggcga ttttgtccat gcgtgttgct gcgtgacaac agagtcaggt
901 gatccagtcc tatccgaaat caaaatgcca actaaacatc atctggtgat
951 tggcaacagt ggtgatccaa agtacattga tctccctgag atcgaggaga
1001 acaagatgta catagcgaag gaaggttatt gctacatcaa tatcttttta
1051 gctatgttgg ttaatgttaa ggagtcacaa gcaaaggaat tcacgaaagt
1101 tgttcgaggc aaactagtta gtgagcttgg taaatggcct tctctactag
1151 acgtggcaac tgcctgttat ttcttgaaag ttttctatcc agacgttgct
1201 aacgctgagc taccacgcat gttagtagat cacaagacaa agataatcca
1251 cgttgtcgat tcgtacggat cactctcgac tggatatcat gttctcaaga
1301 caaacactgt ggaacaactc atcaagttca caaggtgcaa cttggagtcg
1351 agcttgaaac actaccgtgt cggg