Sequence of DPV Chilli leaf curl virus
Pepper leaf curl Lahore Virus-[Pakistan:Lahore2:2004] segment A, complete sequence, clone PeAL2
ACC No: AM491589
Dated: 2010-09-15 | Length: 2686 | CRC: 1180206201
ID AM491589; SV 1; circular; genomic DNA; STD; VRL; 2686 BP.
XX
AC AM491589;
XX
DT 07-JAN-2010 (Rel. 103, Created)
DT 15-SEP-2010 (Rel. 106, Last updated, Version 2)
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DE Pepper leaf curl Lahore Virus-[Pakistan:Lahore2:2004] segment A, complete
DE sequence, clone PeAL2
XX
KW AC4 Protein; C1 gene; C4 gene; coat protein; CP gene; pre-coat protein;
KW REn gene; rep protein; replication associated protein;
KW transcriptional activator protein; TrAP gene; V2 gene.
XX
OS Pepper leaf curl Lahore Virus-[Pakistan:Lahore2:2004]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2686
RA Tahir M.;
RT ;
RL Submitted (05-FEB-2007) to the EMBL/GenBank/DDBJ databases.
RL Tahir M., School of Biological Sciences, University of the Punjab, School
RL of Biological Sciences, University of the Punjab, Lahore, 54590, PAKISTAN.
XX
RN [2]
RA Tahir M., Haider M.S., Briddon R.W.;
RT "Chili leaf curl betasatellite is associated with a distinct recombinant
RT begomovirus, Pepper leaf curl Lahore virus, in Capsicum in Pakistan";
RL Virus Res. 149:109-114(2010).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2686
FT /organism="Pepper leaf curl Lahore
FT Virus-[Pakistan:Lahore2:2004]"
FT /segment="A"
FT /host="Capsicum annuum"
FT /isolate="Pakistan/Lahore2/2004"
FT /mol_type="genomic DNA"
FT /country="Pakistan:Lahore"
FT /isolation_source="leaf"
FT /collected_by="Muhammad Tahir"
FT /collection_date="02-Jul-2004"
FT /clone="PeAL2"
FT /db_xref="taxon:884613"
FT CDS 145. .510
FT /gene="V2"
FT /product="pre-coat protein"
FT /function="movement protein"
FT /db_xref="GOA:D2N127"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:D2N127"
FT /protein_id="CAM33227.1"
FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDL
FT ISVIRARNYVEASSRYNHFHARFEGTPPSQLRQPICQPCCCPHCPRHKGKSMGQQAHES
FT EAQDVQDVQEPRCSKGV"
FT CDS 305. .1075
FT /gene="CP"
FT /product="coat protein"
FT /function="encapsidation"
FT /db_xref="GOA:D2N128"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:D2N128"
FT /protein_id="CAM33228.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR
FT VGKRFRVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN"
FT CDS complement(1072. .1476)
FT /gene="REn"
FT /product="replication associated protein"
FT /function="replication associated"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:B7ZEB4"
FT /protein_id="CAM33229.1"
FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRNRDI
FT ITVQIQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLLFLNNLAVISINN
FT VIRAVDHVLWHVLAQTIHVQSSNIIKFNLY"
FT CDS complement(1217. .1621)
FT /gene="TrAP"
FT /product="transcriptional activator protein"
FT /function="transcription activation"
FT /db_xref="GOA:B7ZEB5"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:B7ZEB5"
FT /protein_id="CAM33230.1"
FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR
FT CHGYGFTHRGTHHCSSGREWRVYLGDNKSPIFQDNRAPQQAIPEEPRHHHRADTVQSQP
FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI"
FT CDS complement(1524. .2609)
FT /gene="C1"
FT /product="rep protein"
FT /function="Replication"
FT /db_xref="GOA:D2N131"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:D2N131"
FT /protein_id="CAM33231.1"
FT /translation="MTRTQSFCVNAKNIFLTYPKCPIPKGQMLDILRSINCPSDKLFIR
FT VAQEKHQDGSLHIHALIQFKGKSKFRNPRHFDVTHPNNASQFHPNFQGAKSSSDVKSYI
FT EKDSDYIDWGQFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYH
FT NLKSNLDRIFQPPAEVYVSPCCSSSFDQVPTELEEWAAQNVVSAAARPLRPMSIVLEGE
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGPKGTG
FT QSNTKYGKPVQIKGGIPATFLCNPGPNSSYKEFLDEEKNSALRNWALKNATFITLEGPL
FT YSGSNQSATQASQEGDQASSR"
FT CDS complement(2195. .2452)
FT /gene="C4"
FT /product="AC4 Protein"
FT /function="symptoms expression"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:D2N132"
FT /protein_id="CAM33232.1"
FT /translation="MGLCISTPSSNSKVNPSSETPDISMSLTLITPPNSTQTSRELSPA
FT LMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMLQQRP"
XX
SQ Sequence 2686 BP; 709 A; 561 C; 641 G; 775 T; 0 other;
am491589 Length: 2686 15-SEP-2010 Type: N Check: 5223 ..
1 accggatggc cgcgattttt ttaagtgggc cccacaacgc acgtgctgac
51 aaagacatgt ggaccaatta aaaccgcccc tcatatctta attgtttcat
101 ggtcccccct ataaacttgg gctccaagta gtgcactctt accaatgtgg
151 gatccattag taaacgagtt tcctgaaacc gttcacggtt ttaggtgtat
201 gttagcagtt aaatatctgc agctagtaga aaatacatat tccccagaca
251 ctctgggcta cgatttaatt agggatttaa tttcagttat tagggctaga
301 aattatgtcg aagcgtccag cagatataat catttccacg cccgcttcga
351 aggtacgccg ccgtctcaac ttcgacagcc catatgccag ccgtgctgct
401 gcccccattg tccgcgtcac aaaggcaaga gcatgggcca acaggcccat
451 gaatcggaag cccaggatgt acaggatgta caggagccca gatgttccaa
501 gggggtgtga aggcccatgt aaggtccagt cttttgagtc taggcacgat
551 gtagttcata tagggaaggt tatgtgtatt agtgatgtta cccgtggtac
601 tggtttaacc catagagtag gtaagcgttt ccgtgttaag tctgtgtatg
651 tattagggaa gatatggatg gatgagaata tcaagaccaa gaatcacacg
701 aatagtgtga tgttctttct tgtccgtgat cgtcgtcctg ttgataaacc
751 acaagatttt ggagaggtgt tcaacatgtt tgacaacgag cctagcactg
801 caaccgtgaa gaatatgcat agagatcgtt atcaggtctt gaggaaatgg
851 cacgcaacgg ttactggtgg ccagtacgct tcgaaggaac aggcattagt
901 taagaagttc gttagggtta acaattatgt tgtgtataac cagcaggagg
951 ctggaaaata tgaaaatcac acagagaatg ctctgatgtt gtacatggca
1001 tgtactcatg cctctaaccc tgtgtatgcg acgttgaaga tacggatcta
1051 tttctatgat tcagtatcga attaataaag attgaatttt attatatttg
1101 aactttgtac atgaattgtt tgtgctaata catgccataa tacatggtcg
1151 acagctctaa ttacattgtt tatactaatt acagctaaat tatttaaaaa
1201 cagcaacact tgggtcctaa atacccttaa gaaatgacca gtctgaggct
1251 gtaaggtcgt ccagattcgg aaggttagaa aacatttgtg tatccccaac
1301 gctttcctca ggttgtgatt gaactgtatc tgcacggtga tgatgtctcg
1351 gttcctcagg aatggcctgt tgtggtgctc ggttatcttg aaatataggg
1401 gatttgttat ctcccagata aacacgccat tctctgcctg agctgcagtg
1451 atgggttccc ctgtgcgtga atccatagcc gtggcagcgt aatgcgatga
1501 aatatgaaca gccgcaatct aggtcaacgc gacgacgcct ggtccccttc
1551 ttggctagcc tgtgttgcac tttgattgga acctgagtag agtgggcctt
1601 cgagggtgat gaaggtcgca ttctttaagg cccaatttct tagtgcgcta
1651 tttttctctt catccaagaa ctctttatag ctagaattgg gtcctggatt
1701 gcagaggaag gtagcgggaa ttccaccttt aatttgaact ggctttccgt
1751 attttgtgtt ggattgccca gtccctttgg gccccatgaa ctctttaaag
1801 tgctttagat aatgcggatc aacgtcatca atgacgttat accaggcgtc
1851 gttattgtag acctttgggc taaggtcgag atgtccacac aaatagttgt
1901 gtggtcccag ggacctggcc cacattgtct tccccgttct actctcaccc
1951 tccaacacta tactcatggg tcttaaaggc cgcgcagcgg cactgacaac
2001 gttctgtgca gcccactcct caagttctgt cggaacttga tcaaaagaag
2051 aagaacaaca aggagaaaca taaacctccg ctggaggttg aaaaatccta
2101 tctaaattag attttaaatt atgatattga aaaataaaat ctttggggag
2151 tttctccctt attattgcta aagctgcttc agccgaaccc gcatttaagg
2201 cctctgctgc agcatcatta gctgtctgtt gacctcctcg agcagatctt
2251 ccatcgatct gaaactgacc ccagtcgatg taatcactgt ccttctcgat
2301 gtaggacttg acatcagagc tggacttagc tccctggaag tttgggtgga
2351 attgggaggc gttattaggg tgagtgacat cgaaatgtct ggggtttctg
2401 aacttggatt tacctttgaa ttggatgagg gcgtggatat gcagagaccc
2451 atcctggtgt ttctcttgtg ccactctgat aaatagttta tcagatgggc
2501 aatttatcga ccgaagaatg tcgagcattt gtcctttggg tattgggcat
2551 ttggggtaag taaggaagat attttttgca ttaacacaaa acgactgcgt
2601 acgagtcata ttgaattggg gacactcaaa actctgagga atgggggaca
2651 ctggggacgc ttttatatgg tgtccccaaa ttgcaa