Sequence of DPV Pepino mosaic virus
Pepino mosaic virus complete sequence, genomic RNA, isolate PepMV-H
ACC No: AM491606
Dated: 2007-02-10 | Length: 6449 | CRC: -968560473
ID AM491606; SV 1; linear; genomic RNA; STD; VRL; 6449 BP.
XX
AC AM491606;
XX
DT 10-FEB-2007 (Rel. 90, Created)
DT 10-FEB-2007 (Rel. 90, Last updated, Version 1)
XX
DE Pepino mosaic virus complete sequence, genomic RNA, isolate PepMV-H
XX
KW coat protein; coat protein gene; polymerase; polymerase gene; TGB 1 gene;
KW TGB 1 protein; TGB 2 gene; TGB 2 protein; TGB 3 gene; TGB 3 protein.
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus.
XX
RN [1]
RP 1-6449
RA Palkovics L.;
RT ;
RL Submitted (03-FEB-2007) to the EMBL/GenBank/DDBJ databases.
RL Palkovics L., Cornivus University of Budapest, Faculty of Horticultural
RL Science, Department of Plant Pathology Budapest, Menesi Road 44., H-1118,
RL HUNGARY.
XX
RN [2]
RA Gaborjanyi R., Takacs A., Palkovics L., Makker C., Boka K., Forray A.,
RA Tuske M.;
RT "First report on the occurrence and distribution Pepino mosaic virus in
RT tomato in Hungary";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6449
FT /organism="Pepino mosaic virus"
FT /lab_host="Lycopersicon esculentum"
FT /isolate="PepMV-H"
FT /mol_type="genomic RNA"
FT /country="Hungary:Kiskunfelegyhaza"
FT /isolation_source="Lycopersicon esculentum"
FT /collection_date="May-2004"
FT /virion
FT /db_xref="taxon:112229"
FT 5'UTR 1. .86
FT CDS 87. .4406
FT /codon_start=1
FT /gene="polymerase"
FT /product="polymerase"
FT /protein_id="CAM33258.1"
FT /translation="MSRVRNTLEKIRDPRVQSSICEAAYQHVRPVLKESLINCPYALND
FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY
FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVDTRIAYISDSLRFMEPADVTHLFD
FT RCQNLKTLMATVVLPVEAIHRQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLE
FT WLKYSRFIGHDPLTGLKYAITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN
FT IFHPRHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH
FT VVNYFTYVSQLSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW
FT KDFSYTIKTEELVITTHTAIGQAISNAAATYKERKQLTQLVKKDIISLADFEQREPEIT
FT YTEFEPETRPQVDCVTNYNNAVKNLGLSALDEQPQCSSSNSHLPCNEISLAMTDDDNAA
FT AIHEIESLLSEPIIAPQLPALPHKTWASYASDTSSMKNREIENIIAELEISRKENNVQQ
FT TTHDYHAVFDTAQSSGDLPWKAWIPLLNAHGFKGDQLQYSPDGKVIQPIQDINNKTPRS
FT EYPSSIPADLVNTLRNIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCSQSKEWKESFA
FT FKMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLC
FT KLPMEHIKTFEKAMIQPGFPVVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVY
FT HESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASNA
FT LQKCKVPILVPSQMKKRAMQDIGHKAMTYAGCQGLTAPRVQILLDNHTQHCSDRVLYTC
FT LSRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDTYRDEKTEMLNSKPADDSPAEPEA
FT PLTHFPVSNGNNLEKLASALPEKFARELYDKHHGYSNTIQTENPVVQLFQHQQAKDETL
FT FWATIEARLSITTPEANLREFVLKKDVGDILFFNYHNVMCLPADPVDFEPRTWEICAAE
FT VKNTYLAKPMANLINAASRQSPDFDANKISLFLKSQWVKKVEKLGAVKSKPGQTIAAFM
FT QQTVMLYGTMARYLRKMRQRFQPKHIFINCETTTGNLNQFVKQGWNFNRTAQTNDFTAF
FT DQSQDGAMLQFEVMKAKFFNIPADIIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANT
FT ECSIAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFKKLQNKLKLTSKTLFPKQVKG
FT DYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDELHNY
FT LTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH"
FT CDS 4432. .5136
FT /codon_start=1
FT /gene="TGB 1"
FT /product="TGB 1 protein"
FT /protein_id="CAM33259.1"
FT /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI
FT SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK
FT LTIGELNARSNS"
FT CDS 5117. .5488
FT /codon_start=1
FT /gene="TGB 2"
FT /product="TGB 2 protein"
FT /protein_id="CAM33260.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLMLIFILTLGIVLTNKFSFSFSRTTHQH
FT SCYNTYPATNNTQPLSGHH"
FT CDS 5340. .5594
FT /codon_start=1
FT /gene="TGB 3"
FT /product="TGB 3 protein"
FT /protein_id="CAM33261.1"
FT /translation="MSSCLSSFSHWVSSSPINLVLALVVLLTSILAITHIQQPTIHNHC
FT QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN"
FT CDS 5633. .6346
FT /codon_start=1
FT /gene="coat protein"
FT /product="coat protein"
FT /protein_id="CAM33262.1"
FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSVFSNPNTAPSFSDLKKVKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
FT 3'UTR 6347. .6411
FT polyA_site 6412
XX
SQ Sequence 6449 BP; 2086 A; 1473 C; 1179 G; 1710 T; 1 other;
am491606 Length: 6449 10-FEB-2007 Type: N Check: 761 ..
1 gaaaacaaaa taaataaata aatatacaaa gttaaactaa cacaacataa
51 ccacgtggaa aaacagcgaa agcactttac cacattatgt ctcgtgtcag
101 aaatactttg gaaaagatca gagacccacg agtacagtcc agcatttgtg
151 aagctgccta tcaacatgtt cgacctgtac ttaaagaatc tctaatcaat
201 tgtccttacg cgcttaatga ttatgaagca gacacccttg agaatcttgg
251 tgtcacaatt aacccccatg caatccaaac acacacacat gccgcagcca
301 aagtagtcga aaatcgtatg cttgaaattg ttggacatca cttgcctaaa
351 gatgaaaaag taactttcat cttcctcaaa cgtagcaagc tgcgttacat
401 gagaagagct gctgtgcata aagatgtctt tgtcaatcat aacattgaac
451 caaaagactt cttcaggtat gatgaagagt ctacatcaac cagcttttcc
501 gttgatacga gaatcgcata catttcagat tctctacgct ttatggaacc
551 tgctgatgtg actcacttgt ttgaccgttg ccaaaacctt aaaacattga
601 tggcaactgt tgtactacct gtggaagcca tacacagaca gacatctcta
651 ttccctgcga tttactccat taactacaat gaagaaggct tcgagtatat
701 cccaggatca cacggtggtg gggcatattt ccacaaatat gaaaccctag
751 aatggctcaa atactctaga ttcattggac acgatccatt gactggttta
801 aaatacgcca ttacgattca aatggtggag agtcttggtg ccaaccacct
851 tttcctcttc caaagaggaa actttgagac gccgctatac aggacgtttc
901 aaaagaatag ttttgtgaca ttcccaaata tattccatcc ccgacacgtc
951 aatgccacaa aacctatgcc tagatcaagg gccatacagc tgtacttata
1001 tgtgaaatca gtaaataaag ttacgcaaag agatatattt gccaaggtta
1051 gacaactgat ttccactgct gagctagaat tgtatgaccc tgatgaactc
1101 acgcatgttg taaattattt cacatatgtg tcacaactgt catctatcaa
1151 tgattatgac aacatgctca aatccagttt cttcaaaaaa ctggtngcac
1201 ccatgcaaca cgactggagg tgcatgattg aattcttccg gggaaagagt
1251 gacttcaatc aactgctcac agctcttcaa tggaaagatt tttcctatac
1301 tattaagact gaagagcttg taattactac acacactgct ataggacaag
1351 caataagcaa tgcagctgcc acatataaag aaagaaagca gctgactcaa
1401 ttggttaaaa aagatataat atccttagca gattttgaac agagagaacc
1451 tgaaataact tacactgagt ttgagcctga aactaggccc caagtggact
1501 gcgttactaa ttataataat gcagtaaaaa atttaggtct ttctgcactt
1551 gatgaacagc cccaatgttc atcttctaac agtcatctac cctgcaatga
1601 aatatcctta gcaatgactg atgacgacaa tgctgcggcc attcatgaaa
1651 ttgaatctct attgtctgaa ccaataatag ctcctcaact cccagcattg
1701 ccacacaaga catgggccag ttatgcttca gacacttcat ccatgaagaa
1751 ccgtgagatt gagaacataa ttgctgagct tgaaatctca cggaaggaaa
1801 ataatgtgca gcaaactact catgattacc atgcagtttt tgacacagct
1851 cagagctccg gagatctccc atggaaagca tggattccac ttctgaatgc
1901 acacggcttc aagggagacc aacttcaata cagtccggat ggcaaagtga
1951 ttcagccaat ccaggacatc aacaacaaaa caccaaggtc tgagtaccca
2001 tccagcattc ctgcagatct tgtgaataca ctgcgcaaca ttaaaagagc
2051 agtgtatgcc attcctatta gccatcgaag ggcaagtgct tacagctctg
2101 atatcaaaaa caataggacc ggcaaattac tctgttccca atcaaaagaa
2151 tggaaggaaa gttttgcttt caaaatgcaa catgaagaca tcgttaaatc
2201 tggagtagtc attcatggct gtggcggctc tggaaaatca caagcattac
2251 aaaactttct cagaactctt ggcgactcta atgactgctg cacagtggtt
2301 gtgccaactg ttgaactcag aaatgattgg gtgaacaaat tatgtaagct
2351 acccatggaa cacattaaaa catttgaaaa agcaatgatt caaccaggat
2401 tcccagttgt tatctttgat gactacacta aattgccacc tggttacatt
2451 gaagcctatt tgttccacca tgccaacact gaacttttca ttcttactgg
2501 agactcgcgg caaagtgtat atcatgagtc caacaatgaa gcatacattg
2551 cctcattaga tgaagccgtc gcttattatg ctaactactg tggattttac
2601 ctaaatgcta cacacagaaa tgttcgcagt ttggccaata agctaggtgt
2651 ttacagtgag aaagaaggtc acctcaaaat tacctttgcc tcaaatgctc
2701 tacaaaagtg caaagtgcca attttggtgc cctctcaaat gaagaagaga
2751 gctatgcaag acatagggca caaagccatg acctacgctg ggtgtcaagg
2801 gcttactgca ccgagagtcc aaattttgct tgacaaccac acacaacact
2851 gctcagacag ggtgctgtac acttgtctct ccagagctgt ggattccatc
2901 cactttatca atacaggccc aaacaattct gaattttggg acaagcttga
2951 ggcaacacca tacctcaaag catttattga tacttacaga gatgagaaaa
3001 cagaaatgct caattctaag cctgctgatg acagtcccgc tgagcctgaa
3051 gctccattga cccactttcc agtgtcaaac ggcaataact tggaaaagtt
3101 agcttcagcg cttcctgaaa aattcgcaag agagttatat gataaacacc
3151 atggatattc taatacaatc caaactgaaa atccagtggt gcaacttttc
3201 cagcatcaac aagccaaaga tgaaacactt ttctgggcaa caatagaagc
3251 tagactttct attacaactc cggaagccaa cttacgagaa tttgtgctaa
3301 agaaagatgt tggagatatc ttgtttttca attaccacaa tgtcatgtgc
3351 ttacctgccg acccagtgga tttcgagcca agaacatggg aaatatgtgc
3401 tgctgaagtt aaaaatacat acttagccaa accaatggct aacttgatca
3451 atgctgctag cagacaatct cctgatttcg acgctaacaa aatttccctg
3501 ttcctaaaat ctcaatgggt caagaaagtg gaaaaattag gtgctgtcaa
3551 gtcaaagcct ggccagacca ttgcggcttt catgcaacaa acagtgatgt
3601 tgtatgggac catggccaga tacctcagaa agatgcgaca aagatttcaa
3651 ccaaaacata tttttatcaa ttgtgaaaca acaactggta atctgaacca
3701 atttgttaaa caaggttgga actttaacag aacagctcag acaaatgatt
3751 tcacagcttt tgaccaatca caagatggtg caatgcttca atttgaagtc
3801 atgaaggcaa aattcttcaa tatccctgcc gacatcattg aaggatacat
3851 caacatcaaa ttgaacgcca aaattttcct tggcacattg tccattatga
3901 ggttgtctgg tgaaggtcca acttttgatg ccaacacaga atgttcaata
3951 gcatatactg ctacaagata ccatcttgat tctacagtca agcaggttta
4001 tgctggagat gatatggcat tagatggagt tgtccaagaa aaaccctctt
4051 ttaaaaaact acagaacaag cttaaactca cctcaaagac actatttcca
4101 aaacaggtta aaggtgatta tgctgaattc tgcggttgga ctttcactcc
4151 tggtggtatc attaaaaacc ctttgaaaat gcatgcttcc attatgttgc
4201 aagaggcaat cggcaattta cacactgctg ccagatcata tgccattgac
4251 atgaagcatt cataccaaat gggtgatgag ctgcacaatt acttaacacc
4301 agatgaagct gaacaacact tccttgctgt tcggaagttg cacaagttac
4351 accaaggcga agcaatgaga cttggtgaaa agagccctcc aaaagcaaca
4401 cattgagggg ttaagttttc cccagttcga aatggaaaga tcaactctga
4451 ttaatttact tcaattgcac cacttcgagc caaaactcag tgttgaagga
4501 atcatagttg tgcacggaat tgcaggcact gggaaaacca ctttacttag
4551 gactttattt tctgcttacc ctagcttagt tataggttca cctaggcctt
4601 gctatttaga taaacaaaac aaaatttcac aagtttgctt atcttgcttt
4651 cccaataccc attgtgatat tgtcgatgag tatcatttgc tagaaagttt
4701 tccagaacca aaattggcta tctttggtga cccctgtcaa tgcacataca
4751 ttgagagact tagagtccca cattacactt ccttcagaac tcatagattt
4801 ggaaagtcaa ctgctgagat tttgaacaaa ctgtttgacc ttaatatagt
4851 ctcagttaag aaagaagacg acatcgttga attctttaac ccttttgaag
4901 ttgaccccac tgagcatatc tctgcctctg aagaagaagt cttggacttt
4951 gtttctgacc aagtggtgac cactagctca gaggaactag caggacttga
5001 gtttgcagaa acaactttct actgcaccac attggccgca gctgttgctg
5051 aaaatcctgc taagactttc atctctctga ctagacacac ccacaaactc
5101 accattgggg aactaaatgc caggtctaac tcctagagct gacctcactg
5151 acacatacaa aatcattgcc attgctttct tgttgtcagc ttgcatttac
5201 ttccaaaata gccactacca acctgttgct ggagacaact tgcaccgttt
5251 gccttttggt ggccaatatc aagacggcac caaaaagata tcttattttc
5301 cacaacagca gtcatacttt cattctggaa acaaattaaa tgtcctcatg
5351 cttatcttca ttctcacatt gggtatcgtc ctcaccaata aatttagttt
5401 tagctttagt cgtactactc accagcattc ttgctataac acatatccag
5451 caaccaacaa tacacaacca ttgtcaggtc atcattgacg gtgctgcaat
5501 agtcataaca aattgtgaga acacaccaga agtgcttaaa gcaatcaact
5551 tctccccttg gaacgggtta agttttccta aatttgaaaa ttaatattga
5601 gtgttcacaa aaatcaactt caataaacaa tcatgcctga cacaacacct
5651 gttgctgcca cttcaagtgc accacccaca gccaaagatg ctggtgccaa
5701 agctccttct gtcttctcaa atcccaatac agctcctagt ttcagtgatt
5751 tgaagaaagt caagtatgtc tccaccgtga cctccgtggc cacaccagct
5801 gaaattgaag ccctaggcaa aatcttcacc gctatgggcc ttgccgccaa
5851 tgagactggt ccggccatgt gggatctagc tcgtgcgtat gctgatgtgc
5901 agagttctaa atcggcacag ctgattggag ctaccccttc caaccctgca
5951 ctatcacgcc gagcccttgc tgctcagttt gatcgaatca atataacccc
6001 caggcaattt tgcatgtact ttgccaaagt tgtttggaac atacttctcg
6051 acagcaacat tccaccagca aattgggcca aacttggtta ccaagaagat
6101 acaaaatttg ctgcatttga cttcttcgat ggagtcacca accctgccag
6151 cctgcagcct gctgatggtc ttatcaggca gccaaatgag aaagaactag
6201 ctgctcactc cgtagctaag tacggcgcct tggctaggca aaagatctcc
6251 acaggtaatt atattaccac acttggagaa gtcacacgtg gacacatggg
6301 aggagctaac accatgtacg cgatagacgc accccctgaa ctttaaacac
6351 tcgaaactta atcagagtgg ggttttctac agtttatttt cctaattatt
6401 tctttgaaat taaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa