Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus DNA-A, clone 32-ug441
ACC No: AM502328
Dated: 2007-06-17 | Length: 2799 | CRC: 1629151641
ID AM502328; SV 1; circular; genomic DNA; STD; VRL; 2799 BP.
XX
AC AM502328;
XX
DT 17-JUN-2007 (Rel. 92, Created)
DT 17-JUN-2007 (Rel. 92, Last updated, Version 1)
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DE East African cassava mosaic virus DNA-A, clone 32-ug441
XX
KW AC1 gene; AC2 gene; AC3 gene; AC4 gene; AV1 gene; AV2 gene; coat protein.
XX
OS East African cassava mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2799
RA Stanley J.;
RT ;
RL Submitted (16-MAR-2007) to the EMBL/GenBank/DDBJ databases.
RL Stanley J., Department of Disease and Stress Biology, John Innes Centre,
RL Colney Lane, Norwich NR74 7UH, UNITED KINGDOM.
XX
RN [2]
RA Sserubombwe W.S., Briddon R.W., Baguma Y.K., Ssemakula G.N., Bull S.,
RA Bua A., Otim-Nape G.W., Stanley J.;
RT "Diversity of begomoviruses associated with mosaic disease of cultivated
RT cassava (Manihot esculenta Cranz) and its wild relative (Manihot glaziovii)
RT in Uganda.";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2799
FT /organism="East African cassava mosaic virus"
FT /mol_type="genomic DNA"
FT /country="Uganda:Iganga"
FT /clone="32-ug441"
FT /virion
FT /db_xref="taxon:62079"
FT CDS 172. .528
FT /gene="AV2"
FT /product="AV2 protein"
FT /protein_id="CAM59363.1"
FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT ETQDVQNVSKPRCP"
FT CDS 332. .1105
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="CAM59364.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR
FT VGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQDFGQIFNMFDNE
FT PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT CDS complement(1102. .1506)
FT /gene="AC3"
FT /product="AC3 protein"
FT /protein_id="CAM59365.1"
FT /translation="MDSRTGELITAPQARNGVFTWDITNPLYFEITDHDKRPGNMNHDI
FT ITLQIRFNHNLRKALGIHKCFLNFKIWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT
FT VLQAVVHVVYDVLLNTLQVTEQHAIKFNLY"
FT CDS complement(1247. .1654)
FT /gene="AC2"
FT /product="AC2 protein"
FT /protein_id="CAM59366.1"
FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSKEWRFYLGHNKSPLFRNHRPRQEAREHEPRHHHTPDTVQPQ
FT PSEGIGDSQVFSQLQDLDDLTASDWSFLKSI"
FT CDS complement(1569. .2642)
FT /gene="AC1"
FT /product="AC1 protein"
FT /protein_id="CAM59367.1"
FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLQALSYPTNIKFIR
FT VCRELHQDGVPHLHVLIQFENKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI
FT EKGGDFLDAGLFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH
FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEDIEVWVSDNICSPAARPWRPISIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITLHEPL
FT FSSAHQSPTPHSEDQGR"
FT CDS complement(2252. .2485)
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="CAM59368.1"
FT /translation="MGCLISMFSSNSKTSSNVPTRDSSISFPHPDQHISIRTFRALNHR
FT PMSKLTLKREGIFLTLDFSKSMPEVQEGRASI"
XX
SQ Sequence 2799 BP; 738 A; 545 C; 734 G; 782 T; 0 other;
am502328 Length: 2799 17-JUN-2007 Type: N Check: 1436 ..
1 accggatggc cgcgcccgaa aaagcaggtt gaccccacaa tgaccgcgcc
51 cgtgaaagaa agtggtccct gcgcatttgt tttggtcggc cagtcatatt
101 cacgcgtgaa agtctagata tttgttgttt gtctttatag acttcgtcgc
151 gaagtagtag agcgcgtcaa catgtgggat ccattggtga acgattttcc
201 cgaaaccgtt cacggtttcc gttctatgct tgctgttaaa tacctgttac
251 atctggaaca ggaatacgat cgcggtactg tcggggctga gtatatacgg
301 gatctaatag gggttctacg gtgtaagaat tatgtcgaag cgaccaggag
351 atataataat ctcaacaccc gtatccaagg tgcggaggag gctgaacttc
401 gacagcccat acacgaaccg tgttgttgcc cccactgtcc gcgtcaccag
451 aagcaaaata tgggccaaca ggcccatgta tcggaaaccc aagatgtaca
501 gaatgtatcg aagcccagat gtccctaagg gctgtgaagg cccatgtaag
551 gtccagtcgt ttgagcagag ggatgatgtg aagcaccttg gtatctgtaa
601 ggtgataagt gatgtgacgc gtgggcctgg gctgacacac agggtcggaa
651 agaggttttg tatcaagtcc atttacattc ttggtaagat ctggatggat
701 gaaaatatta agaagcagaa tcacactaat aatgtgatgt tttacctgct
751 tagggataga aggccgtatg gcaatgcgcc ccaagacttt gggcagatat
801 ttaacatgtt tgataatgag cccagtactg caacaattaa gaacgatttg
851 agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggggg
901 tccatctggc atgaaggagc aggcgttggt gaaaaggttt tacaagctga
951 atcatcacgt gacatataat catcaggagg cagggaagta tgagaatcac
1001 acagagaatg cgttgttatt gtatatggca tgtacacatg cctcgaatcc
1051 tgtgtatgct acgctgaaaa tacgcatcta tttttatgat gcagtgacaa
1101 attaataaag gttgaatttt attgcatgtt gctccgtaac ttggagtgtg
1151 tttagtaata catcgtacac aacatgaaca acagcttgaa ggacagtgtt
1201 aatggaaata acgcctatca tatctaaata cttgagcact tgatatctaa
1251 atactcttaa gaaacgacca gtctgaggcc gtaaggtcgt ccagatcttg
1301 aagttgagaa aacacttgtg aatccccaat gccttccgaa ggttgtggtt
1351 gaaccgtatc tggagtgtga tgatgtcgtg gttcatgttc cctggcctct
1401 tgtcgtggtc ggtgatttcg aaatagaggg gatttgttat gtcccaggta
1451 aaaacgccat tccttgcttg aggcgcagtg atgagttccc ctgtgcgaga
1501 atccatggtt gatgcagtcg atatggagat agaacgagca gccgcattcg
1551 aggtctaccc gcctacgtct aacggccctg gtcttcgctg tgcggtgttg
1601 gactttgatg ggcactagag aacaatggct cgtggagggt gatgaaggtg
1651 gcattcttta aagcccaggc tttaagggat tggttctttt cctcgtccag
1701 aaactcttta tatgatgatg ttggtcctgg attgcagagg aagatagtgg
1751 gaatgccgcc tttaatttga atgggcttcc cgtattttgt attgctttgc
1801 cagtctcgtt gggcccccat gaattctttg aagtgtttga ggtagtgggg
1851 gtcgacgtca tcaatgacgt tgtaccaggc gtcgtttgaa tataccttgg
1901 gagacagatc caggtgtcca caaagataat tatggggtcc cagtgaacga
1951 gcccacattg ttttgccggt tcggctatca ccttcgagaa caatactgat
2001 cggtctccat ggccgcgcag cgggactgca tatattatcg gatacccata
2051 cctctatgtc ttctgggact tgtgtaaaag aagatgataa gaacggacta
2101 acgtaagttt gtggcggagc ctggaagatt ctatctgcgt tagcagatat
2151 gttatggaac tgtaaaaaaa aggactttgg atctttttct ttaataattt
2201 gaagagcctc ggatttagac gaagcattca acgcgtctgc atatacctga
2251 gctaaatgct ggccctcccc tcttgcactt ctggcatcga cttggaaaag
2301 tccagcgtca agaaaatccc ctcccttttc aatgtaagct ttgacatcgg
2351 acgatgattt agcgccctga atgttcggat ggaaatgtgt tgatcgggat
2401 ggggaaatga gatcgaagaa tctcgggttg gtacattgga acttgttttc
2451 gaattggatg agaacatgga gatgaggcac cccatcctga tgtagttctc
2501 tgcaaaccct aatgaatttg atattcgtcg ggtacgaaag ggcttgtaat
2551 tgggaaaggg cctcttcttt tgttaatgag catcggggat aggttatgaa
2601 ataatttttg gcatttattt gaaaacgacc ggctcttggc atattggctg
2651 tcgttttgga atgggggaca ctcaaaactc caggggaacg gtggaatggg
2701 gggcaatata tatgatgtcc cccaatggca tatgtgtaaa taggtagact
2751 tccatttaaa atttgaattc cgaatattgg cggccatccg attaatatt