Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus DNA-A, clone 26-ug115a
ACC No: AM502331
Dated: 2007-06-17 | Length: 2799 | CRC: 76252477
ID AM502331; SV 1; circular; genomic DNA; STD; VRL; 2799 BP.
XX
AC AM502331;
XX
DT 17-JUN-2007 (Rel. 92, Created)
DT 17-JUN-2007 (Rel. 92, Last updated, Version 1)
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DE East African cassava mosaic virus DNA-A, clone 26-ug115a
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KW AC1 gene; AC2 gene; AC3 gene; AC4 gene; AV1 gene; AV2 gene; coat protein.
XX
OS East African cassava mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2799
RA Stanley J.;
RT ;
RL Submitted (16-MAR-2007) to the EMBL/GenBank/DDBJ databases.
RL Stanley J., Department of Disease and Stress Biology, John Innes Centre,
RL Colney Lane, Norwich NR74 7UH, UNITED KINGDOM.
XX
RN [2]
RA Sserubombwe W.S., Briddon R.W., Baguma Y.K., Ssemakula G.N., Bull S.,
RA Bua A., Otim-Nape G.W., Stanley J.;
RT "Diversity of begomoviruses associated with mosaic disease of cultivated
RT cassava (Manihot esculenta Cranz) and its wild relative (Manihot glaziovii)
RT in Uganda.";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2799
FT /organism="East African cassava mosaic virus"
FT /mol_type="genomic DNA"
FT /country="Uganda:Wakiso"
FT /clone="26-ug115a"
FT /virion
FT /db_xref="taxon:62079"
FT CDS 172. .528
FT /gene="AV2"
FT /product="AV2 protein"
FT /protein_id="CAM59375.1"
FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQPAHVS
FT ETQDVQNVSKPRCP"
FT CDS 332. .1105
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="CAM59376.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR
FT VGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQDFGQIFNMFDNE
FT PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN"
FT CDS complement(1102. .1506)
FT /gene="AC3"
FT /product="AC3 protein"
FT /protein_id="CAM59377.1"
FT /translation="MDSRTGELITAPQARNGVFTWDITNPLYFEITDHDKRPGNMNHDI
FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT
FT VLQAVDHVVYDVLLNTLQVTEQHAVKFNLY"
FT CDS complement(1247. .1654)
FT /gene="AC2"
FT /product="AC2 protein"
FT /protein_id="CAM59378.1"
FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSKEWRFYLGHNKSPLFRNHRPRQEAREHEPRHHHTPDTVQPQ
FT PSEGIGDSQVFSQLQGLDDLTASDWSFLKSI"
FT CDS complement(1563. .2642)
FT /gene="AC1"
FT /product="AC1 protein"
FT /protein_id="CAM59379.1"
FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLQALSYPTNIKFIR
FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLIFPSRSTHFHPNIQGAKSSSDVKAYI
FT EKEGEFLDAGLFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH
FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEDIEVWVSENICSPAARPWRPISIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITLHEPL
FT FSSAHQSPTPHSEDQGRQT"
FT CDS complement(2252. .2485)
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="CAM59380.1"
FT /translation="MGCLISMFSSNSKASSNVPTRGSSISFSPPDQHISIRTFRELNPR
FT PMSKLTLKRKGNFLTLDFSKSMPEVQGERDSI"
XX
SQ Sequence 2799 BP; 733 A; 551 C; 733 G; 782 T; 0 other;
am502331 Length: 2799 17-JUN-2007 Type: N Check: 2459 ..
1 accggatggc cgcgcccgaa aaagcaggtg gaccccacaa tgaccgcgcc
51 cgtgaaagaa agtggtccct gcgcacttgt tttggtcggc cagtcatatt
101 cacgcgtgaa agtctagata tttgttgttt gtccttatag acttcgtcgc
151 gaagtagtag agcgcgtcaa catgtgggat ccattggtga acgattttcc
201 cgaaaccgtt cacggtttcc gttctatgct tgctgttaaa tacctgttac
251 atctggaaca ggaatacgat cgcggtactg tcggggctga gtatatacgg
301 gatctaatag gggttctacg gtgtaagaat tatgtcgaag cgaccaggag
351 atataataat ctcaacaccc gtatccaagg tgcggaggag gctgaacttc
401 gacagcccat acacgaaccg tgttgttgcc cccactgtcc gcgtcaccag
451 aagcaaaata tgggccaacc ggcccatgta tcggaaaccc aagatgtaca
501 gaatgtatcg aagcccagat gtccctaagg gctgtgaagg cccatgtaag
551 gtccagtcgt ttgagcagag ggatgatgtg aagcaccttg gtatctgtaa
601 ggtgattagt gatgtgacgc gtgggcctgg gctgacacac agggtcggaa
651 agaggttttg tatcaagtcc atttacattc ttggtaagat ctggatggat
701 gaaaatatta agaagcagaa tcacacgaat aatgtgatgt tttacctgct
751 tagagataga aggccgtatg gcaatgcgcc ccaagacttt gggcagatat
801 ttaacatgtt tgataatgag cccagtactg caacgattaa gaacgatttg
851 agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggtgg
901 tccatctggc atgaaggagc aggcgttggt gaaaaggttt tacaagctga
951 atcatcacgt gacatataat catcaggagg cagggaagta tgagaatcac
1001 acagagaatg cgttgttatt gtatatggca tgtacacatg cctcgaatcc
1051 tgtgtatgct acgctgaaaa tacgcatcta tttttatgat gcagtgacaa
1101 attaataaag gttgaatttt actgcatgtt gctccgtaac ttggagtgtg
1151 tttagtaata catcgtacac aacatgatca acagcttgaa ggacagtgtt
1201 aatggaaata acgcctatca tatctaaata cttgagcact tgatatctaa
1251 atactcttaa gaaacgacca gtctgaggcc gtaaggtcgt ccagaccttg
1301 aagttgagaa aacacttgtg aatccccaat gccttccgaa ggttgtggtt
1351 gaaccgtatc tggagtgtga tgatgtcgtg gttcatgttc ccgggcctct
1401 tgtcgtggtc ggtgatttcg aaatagaggg gatttgttat gtcccaggta
1451 aaaacgccat tccttgcttg aggcgcagtg atgagttccc ctgtgcgaga
1501 atccatggtt gatgcagtcg atatggagat agaacgagca gccgcattcg
1551 aggtctaccc gtctacgtct gacggccctg gtcttcgctg tgcggtgttg
1601 gactttgatg ggcactagag aacaatggct cgtggagggt gatgaaggtg
1651 gcattcttta aagcccaggc tttaagggat tggttctttt cctcgtccag
1701 aaactcttta tatgatgatg ttggtcctgg attgcagagg aagatagtag
1751 gaatgccgcc tttaatttga attggcttcc cgtattttgt attgctttgc
1801 cagtctcttt gggcccccat gaattctttg aagtgtttga ggtagtgggg
1851 gtcgacgtca tcaatgacgt tgtaccaggc gtcgtttgaa tataccttgg
1901 gagacagatc caggtgtcca caaagataat tatggggtcc cagtgaacga
1951 gcccacattg ttttgccggt tcggctatca ccttctagaa caatactgat
2001 cggtctccat ggccgcgcag cgggactgca tatattttcg gatacccata
2051 cctctatgtc ttctgggact tgtgtaaaag aggatgataa gaacggacta
2101 acgtaagttt gtggcggagc ctggaagatt ctatctgcgt tagcagatat
2151 gttatggaac tgtaaaaaaa aggactttgg atctttttct ttaataattt
2201 gaagagcctc ggatttagac gaagcattca acgcgtctgc atatacctga
2251 gctaaatgct gtccctctcc ccttgcactt ctggcatcga cttggaaaag
2301 tccagcgtca agaaattccc cttccttttc aatgtaagct ttgacatcgg
2351 acgaggattt agctccctga atgttcggat ggaaatgtgt tgatcgggag
2401 gggaaaatga gatcgaagaa ccgcgggttg gtacattgga acttgccttc
2451 gaattggatg agaacatgga gatgaggcac cccatcctga tgtagttctc
2501 tgcaaaccct aatgaatttg atattcgtcg ggtatgaaag ggcttgtaat
2551 tgggaaaggg cctcttcttt tgttaatgag catcggggat aggttatgaa
2601 ataatttttg gcatttattt gaaaacgacc ggctcttggc atattggctg
2651 tcgttttgga tcgggggaca ctcaaaactc caggggaacg gtggaatggg
2701 gggcattata tatgatgtcc cccaatggca tatgtgtaaa taggtagact
2751 tccattcaaa atttgaattc aaaatattgg cggccatccg attaatatt