Sequence of DPV East African cassava mosaic virus
East African cassava mosaic virus DNA-A, clone wcass6-8
ACC No: AM502334
Dated: 2007-06-17 | Length: 2799 | CRC: 1265592945
ID AM502334; SV 1; circular; genomic DNA; STD; VRL; 2799 BP.
XX
AC AM502334;
XX
DT 17-JUN-2007 (Rel. 92, Created)
DT 17-JUN-2007 (Rel. 92, Last updated, Version 1)
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DE East African cassava mosaic virus DNA-A, clone wcass6-8
XX
KW AC1 gene; AC2 gene; AC3 gene; AC4 gene; AV1 gene; AV2 gene; coat protein.
XX
OS East African cassava mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2799
RA Stanley J.;
RT ;
RL Submitted (16-MAR-2007) to the EMBL/GenBank/DDBJ databases.
RL Stanley J., Department of Disease and Stress Biology, John Innes Centre,
RL Colney Lane, Norwich NR74 7UH, UNITED KINGDOM.
XX
RN [2]
RA Sserubombwe W.S., Briddon R.W., Baguma Y.K., Ssemakula G.N., Bull S.,
RA Bua A., Otim-Nape G.W., Stanley J.;
RT "Diversity of begomoviruses associated with mosaic disease of cultivated
RT cassava (Manihot esculenta Cranz) and its wild relative (Manihot glaziovii)
RT in Uganda.";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2799
FT /organism="East African cassava mosaic virus"
FT /specific_host="Manihot glaziovii"
FT /mol_type="genomic DNA"
FT /country="Uganda:Rakai"
FT /clone="wcass6-8"
FT /virion
FT /db_xref="taxon:62079"
FT CDS 172. .528
FT /gene="AV2"
FT /product="AV2 protein"
FT /protein_id="CAM59393.1"
FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL
FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS
FT ETQDVQNVSKPRCP"
FT CDS 332. .1105
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="CAM59394.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA
FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR
FT VGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQDFGQIFNMFDNE
FT PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEN
FT HTENALLLYMACTRASNPVYATLKIRIYFYDAVTN"
FT CDS complement(1102. .1506)
FT /gene="AC3"
FT /product="AC3 protein"
FT /protein_id="CAM59395.1"
FT /translation="MDSRTGELITAPQARNGVFTWDITNPLYFEITDHDKRPGNMNHDI
FT ITLQIRFNHNLRKALGIHKCFFNFKVWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT
FT VLQAVDHVVYDVLLNTLQVTEQHAIKFNLY"
FT CDS complement(1247. .1654)
FT /gene="AC2"
FT /product="AC2 protein"
FT /protein_id="CAM59396.1"
FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI
FT DCINHGFSHRGTHHCASSKEWRFYLGHNKSPLFRNHRPRQEAREHEPRHHHTPDTVQPQ
FT PSEGIGDSQVFFQLQGLDDLTASDWSFLKSI"
FT CDS complement(1563. .2642)
FT /gene="AC1"
FT /product="AC1 protein"
FT /protein_id="CAM59397.1"
FT /translation="MPRAGRFQINAKNYFITYPRCSSTKEEALSQLQALSYPTNIKFIR
FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI
FT EKGGEFLDAGIFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH
FT NISANADRIFQAPPQTYVSPFLSSSFTHVPEDIEVWVSENICSPAARPWRPISIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITLHEPL
FT FSSAHQSPTPHSENQGRQT"
FT CDS complement(2252. .2485)
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="CAM59398.1"
FT /translation="MGCLISMFSSNSKASSNVPTRDSSISFPHPDQHISIRTFRELNHR
FT PMSKLTLKREGNFLTLEFSKSMPEVQEGRANI"
XX
SQ Sequence 2799 BP; 730 A; 550 C; 731 G; 788 T; 0 other;
am502334 Length: 2799 17-JUN-2007 Type: N Check: 5462 ..
1 accggatggc cgcgtccgaa aaagcagggt gaccccacaa tgaccgcgcc
51 cgtgaaagaa agtggtccct gcgcacttgt tttggtcggc cagtcatatt
101 cacgcgtgaa agtctagata tttgctgttt gtctttatag acttcgtcgc
151 gaagtagtag agcgcgtcaa catgtgggat ccattggtga acgattttcc
201 cgaaaccgtt cacggtttcc gttctatgct tgctgttaaa tacctgttac
251 atttggaaca ggaatacgat cgcggtactg tcggggctga gtatatacgg
301 gatctaatag gggttctacg gtgtaagaat tatgtcgaag cgaccaggag
351 atataataat ctcaacaccc gtatccaagg tgcggaggag gctgaacttc
401 gacagcccat acacgaaccg tgttgttgcc cccactgtcc gcgtcaccag
451 aagcaaaata tgggccaaca ggcccatgta tcggaaaccc aagatgtaca
501 gaatgtatcg aagcccagat gtccctaagg gctgtgaagg cccatgtaag
551 gtccagtcgt ttgagcagag ggatgatgtg aagcacctcg gtatctgtaa
601 ggtgattagt gatgtgacgc gtgggcctgg gctgacacac agggtcggaa
651 agaggttttg tatcaagtcc atttacattc ttggtaagat ctggatggat
701 gaaaatatta agaagcagaa tcacacgaat aatgtgatgt tttacctgct
751 tagggataga aggccgtatg gcaatgcgcc ccaagacttt gggcagatat
801 ttaacatgtt tgataatgag cccagtactg caacaattaa gaatgatttg
851 agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggtgg
901 tccatctggc atgaaggagc aggcgttggt gaaaaggttt tacaagctga
951 atcatcatgt gacatataat catcaggagg cagggaagta tgagaatcac
1001 acagagaatg cgttgttatt gtatatggca tgtacacgtg cctcgaatcc
1051 tgtgtatgct acgctgaaaa tacgcatcta tttttatgat gcagtgacaa
1101 attaataaag gttgaatttt attgcatgtt gctccgtaac ttggagtgtg
1151 tttagtaata catcgtacac aacatgatca acagcttgaa ggacagtgtt
1201 aatggaaata acgcctatca tatctaaata cttgagcact tgatatctaa
1251 atactcttaa gaaacgacca gtctgaggcc gtaaggtcgt ccagaccttg
1301 aagttgaaaa aacacttgtg aatccccaat gccttccgaa ggttgtggtt
1351 gaaccgtatc tggagtgtga tgatgtcgtg gttcatgttc cctggcctct
1401 tgtcgtggtc ggtgatttcg aaatagaggg gatttgttat gtcccaggta
1451 aaaacgccat tccttgcttg aggcgcagtg atgagttccc ctgtgcgaga
1501 atccatggtt gatgcagtcg atatggagat agaacgagca gccgcattcg
1551 aggtctaccc gcctacgtct gacggccctg gttttcgctg tgcggtgttg
1601 gactttgatg ggcactagag aacaatggct cgtggagggt gatgaaggtg
1651 gcattcttta aagcccacgc tttaagggat tggttctttt cctcgtccag
1701 aaactcttta tatgatgatg tcggtcctgg attgcagagg aagatagtgg
1751 gaatgccgcc tttaatttga attggctttc cgtattttgt attgctttgc
1801 cagtctcttt gggcccccat gaattctttg aagtgtttga ggtagtgggg
1851 gtcgacgtca tcaatgacgt tgtaccaggc gtcgtttgaa tataccttgg
1901 gagacagatc caggtgtcca caaagataat tatggggtcc cagtgaacga
1951 gcccacattg ttttgccggt tcggctatca ccttctagaa caatactgat
2001 cggtctccat ggccgcgcag cgggactgca tatattttcg gatacccata
2051 cctctatgtc ttctgggacg tgtgtaaaag atgatgataa gaacggacta
2101 acgtaagttt gtggcggagc ctggaagatt ctatctgcgt tagcagatat
2151 gttatggaac tgtaaaaaaa aggactttgg atctttttct ttaataattt
2201 gaagagcctc ggatttagac gaagcattca acgcgtctgc atatacctga
2251 gctaaatgtt ggccctcccc tcttgcactt ctggcatcga cttggaaaat
2301 tccagcgtca agaaattccc ctcccttttc aatgtaagct ttgacatcgg
2351 acgatgattt agctccctga atgttcggat ggaaatgtgt tgatcgggat
2401 ggggaaatga gatcgaagaa tctcgggttg gtacattgga acttgccttc
2451 gaattggatg agaacatgga gatgaggcac cccatcctga tgtagttctc
2501 tgcaaaccct aatgaatttg atattcgtcg ggtacgaaag ggcttgtaat
2551 tgggaaaggg cctcttcttt cgttgatgag catcggggat aggttatgaa
2601 ataatttttg gcattaattt gaaaacgacc ggctcttggc atattggctg
2651 tcgttttgga tcgggggaca ctcaaaactc caggggaacc gtggaatggg
2701 gggcattata tatgatgtcc cccaatggca tatgtgtaaa taggtagact
2751 tccattcaaa atttgaattc cgaatattgg cggccatccg attaatatt